Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 129 experiments or choose conditions or try the comparative fitness browser

500 ntABZR87_RS05050 and ABZR87_RS05055 are separated by 85 nucleotidesABZR87_RS05055 and ABZR87_RS05060 are separated by 14 nucleotidesABZR87_RS05060 and ABZR87_RS05065 are separated by 14 nucleotidesABZR87_RS05065 and ABZR87_RS05070 are separated by 39 nucleotides ABZR87_RS05050: ABZR87_RS05050 - dienelactone hydrolase family protein, at 1,063,711 to 1,064,673 _RS05050 ABZR87_RS05055: ABZR87_RS05055 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB, at 1,064,759 to 1,066,225 _RS05055 ABZR87_RS05060: ABZR87_RS05060 - DUF484 family protein, at 1,066,240 to 1,066,929 _RS05060 ABZR87_RS05065: ABZR87_RS05065 - tyrosine recombinase XerC, at 1,066,944 to 1,067,930 _RS05065 ABZR87_RS05070: ABZR87_RS05070 - class I SAM-dependent rRNA methyltransferase, at 1,067,970 to 1,069,163 _RS05070
Group Condition ABZR87_RS05050 ABZR87_RS05055 ABZR87_RS05060 ABZR87_RS05065 ABZR87_RS05070
soil soil sample 5; outgrowth in LB +0.2 N.D. -1.4 -3.7 +0.1
nitrogen source nitrogen source nitrate 5mM -0.5 N.D. -1.1 -2.6 -0.2
soil soil EcoFAB sample 2; outgrowth in LB -0.2 N.D. -2.3 -1.6 -0.1
carbon source Octanoic (C) -0.2 N.D. -2.5 -1.8 +0.4
soil soil sample 2; outgrowth in LB -0.1 N.D. -1.3 -2.9 +0.1
carbon source Heptanoic (C) -0.3 N.D. -2.7 -1.1 +0.3
no_plant_soil no_plant_soil sample 1; outgrowth in LB -0.0 N.D. -1.4 -2.4 +0.0
no_plant_soil no_plant_soil sample 2; outgrowth in LB -0.1 N.D. -1.1 -2.7 +0.1
no_plant_soil no_plant_soil sample 3; outgrowth in LB -0.3 N.D. -0.6 -2.9 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 N.D. -1.7 -2.0 +0.2
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +0.4 N.D. -1.9 -2.1 +0.0
carbon source Protocatechuic Acid (C) -0.2 N.D. -1.2 -2.3 +0.0
carbon source Octanoic (C) -0.3 N.D. -2.2 -1.3 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 N.D. -1.0 -2.1 -0.1
carbon source Carbon source D-Glucose 10 mM -0.5 N.D. -1.4 -1.4 -0.0
soil soil EcoFAB sample 1; outgrowth in LB +0.1 N.D. -1.2 -2.2 +0.0
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) +0.3 N.D. -1.6 -2.1 +0.1
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.2 N.D. -1.7 -2.0 +0.2
rhizosphere rhizosphere sample 1; outgrowth in LB -0.0 N.D. -1.4 -1.8 -0.0
carbon source Dodecandioic (C) -0.3 N.D. -1.0 -2.1 +0.2
soil soil sample 1; outgrowth in LB +0.2 N.D. -1.0 -2.4 +0.0
soil soil sample 6; outgrowth in LB -0.3 N.D. -1.4 -1.5 +0.1
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +0.1 N.D. -0.9 -2.2 +0.0
root root EcoFAB sample 2; outgrowth in LB +0.5 N.D. -1.0 -2.6 +0.0
soil soil sample 4; outgrowth in LB -0.1 N.D. -0.7 -2.3 +0.1
soil soil sample 3; outgrowth in LB +0.2 N.D. -1.0 -2.3 +0.1
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.3 N.D. -1.1 -1.8 +0.3
carbon source Lauric (C) -0.3 N.D. -1.4 -1.4 +0.3
carbon source Sebacic (C) -0.2 N.D. -1.8 -1.3 +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.6 N.D. -0.7 -2.5 +0.3
remove
ABZR87_RS05050
plot		 remove
ABZR87_RS05055
plot		 remove
ABZR87_RS05060		 remove
ABZR87_RS05065
plot		 remove
ABZR87_RS05070
plot