Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS04885 and ABZR87_RS04890 are separated by 182 nucleotidesABZR87_RS04890 and ABZR87_RS04895 are separated by 224 nucleotidesABZR87_RS04895 and ABZR87_RS04900 overlap by 4 nucleotidesABZR87_RS04900 and ABZR87_RS04905 are separated by 30 nucleotides ABZR87_RS04885: ABZR87_RS04885 - lytic transglycosylase domain-containing protein, at 1,024,015 to 1,025,967 _RS04885 ABZR87_RS04890: ABZR87_RS04890 - complex I NDUFA9 subunit family protein, at 1,026,150 to 1,027,154 _RS04890 ABZR87_RS04895: ABZR87_RS04895 - glutathione S-transferase family protein, at 1,027,379 to 1,028,080 _RS04895 ABZR87_RS04900: ABZR87_RS04900 - multifunctional CCA addition/repair protein, at 1,028,077 to 1,029,363 _RS04900 ABZR87_RS04905: ABZR87_RS04905 - glutamate/aspartate ABC transporter substrate-binding protein, at 1,029,394 to 1,030,299 _RS04905
Group Condition ABZR87_RS04885 ABZR87_RS04890 ABZR87_RS04895 ABZR87_RS04900 ABZR87_RS04905
carbon source Lauric (C) -2.1 +0.2 -0.7 N.D. +0.4
root root sample 5; outgrowth in LB -0.3 -0.2 -0.3 N.D. -1.1
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.3 -0.1 -1.1 N.D. -0.2
root root EcoFAB sample 2; outgrowth in LB -0.4 -0.1 -0.5 N.D. -0.4
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 -0.3 -0.4 N.D. -0.7
carbon source Octanoic (C) -0.0 +0.0 -0.9 N.D. -0.3
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.2 -0.1 -0.8 N.D. +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.3 -0.3 N.D. -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.2 -0.5 N.D. -0.1
rhizosphere rhizosphere sample 2; outgrowth in LB -0.3 -0.3 -0.2 N.D. -0.1
no_plant_soil no_plant_soil sample 3; outgrowth in LB -0.0 -0.0 -0.5 N.D. -0.4
rhizosphere rhizosphere sample 3; outgrowth in LB -0.1 -0.0 +0.3 N.D. -1.0
carbon source 4-Hydroxybenzoic Acid (C) +0.2 -0.0 +0.0 N.D. -0.9
rhizosphere rhizosphere sample 1; outgrowth in LB -0.3 -0.1 -0.4 N.D. +0.2
root root sample 6; outgrowth in LB -0.2 +0.1 -0.4 N.D. -0.2
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.2 +0.0 -0.5 N.D. +0.1
rhizosphere rhizosphere sample 4; outgrowth in LB -0.3 +0.0 -0.4 N.D. +0.1
no_plant_soil no_plant_soil sample 1; outgrowth in LB -0.1 +0.2 -0.5 N.D. +0.1
soil soil EcoFAB sample 1; outgrowth in LB -0.6 -0.3 -0.5 N.D. +1.3
carbon source Heptanoic (C) -0.0 +0.2 -0.4 N.D. +0.1
carbon source Octanoic (C) +0.0 +0.7 -0.8 N.D. +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.3 -0.3 N.D. -0.0
nitrogen source nitrogen source nitrite 5mM -0.2 -0.0 +0.8 N.D. -0.2
carbon source Dodecandioic (C) +0.6 +0.0 -0.3 N.D. +0.2
carbon source Protocatechuic Acid (C) +0.5 -0.2 -0.2 N.D. +0.2
nitrogen source nitrogen source nitrite 5mM -0.2 -0.0 +0.7 N.D. +0.0
carbon source Azelaic (C) +0.7 -0.1 -0.0 N.D. +0.1
carbon source propionate (C) +0.3 -0.1 +0.2 N.D. +0.3
carbon source Sebacic (C) +0.7 -0.0 +0.0 N.D. +0.2
carbon source Sebacic (C) +0.7 +0.0 +0.3 N.D. +0.2
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