Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS04860 and ABZR87_RS04865 are separated by 10 nucleotidesABZR87_RS04865 and ABZR87_RS04870 are separated by 29 nucleotidesABZR87_RS04870 and ABZR87_RS04875 are separated by 4 nucleotidesABZR87_RS04875 and ABZR87_RS04880 are separated by 17 nucleotides ABZR87_RS04860: ABZR87_RS04860 - phage holin family protein, at 1,021,056 to 1,021,400 _RS04860 ABZR87_RS04865: ABZR87_RS04865 - methylenetetrahydrofolate reductase [NAD(P)H], at 1,021,411 to 1,022,241 _RS04865 ABZR87_RS04870: ABZR87_RS04870 - TfoX/Sxy family protein, at 1,022,271 to 1,022,729 _RS04870 ABZR87_RS04875: ABZR87_RS04875 - pyridoxamine 5'-phosphate oxidase family protein, at 1,022,734 to 1,023,348 _RS04875 ABZR87_RS04880: ABZR87_RS04880 - 5-formyltetrahydrofolate cyclo-ligase, at 1,023,366 to 1,023,971 _RS04880
Group Condition ABZR87_RS04860 ABZR87_RS04865 ABZR87_RS04870 ABZR87_RS04875 ABZR87_RS04880
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -0.4 -3.9 +0.0 -0.3 -3.2
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.2 -3.2 +0.2 -0.2 -2.9
carbon source Octanoic (C) +0.2 -3.4 -0.9 -0.4 -2.8
soil soil EcoFAB sample 2; outgrowth in LB -0.5 -3.5 +0.0 -0.2 -3.1
nitrogen source nitrogen source nitrate 20mM -0.7 -5.6 -0.2 +0.1 -0.1
nitrogen source nitrogen source nitrate 20mM -1.0 -5.5 +0.1 +0.0 -0.2
no_plant_soil no_plant_soil sample 3; outgrowth in LB -0.7 -4.4 +0.1 +0.2 -1.6
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.9 -2.6 -0.2 +0.1 -2.7
carbon source Octanoic (C) -0.6 -3.4 -0.1 -0.1 -2.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.6 -3.7 +0.0 -0.1 -1.7
carbon source Azelaic (C) -0.5 -4.0 -0.1 -0.2 -1.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -4.2 +0.0 -0.1 -1.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -4.3 -0.3 -0.0 -1.6
nitrogen source nitrogen source nitrite 5mM -1.1 -4.3 -0.3 +0.1 -0.4
nitrogen source nitrogen source Ammonium chloride 20mM -0.9 -4.9 -0.2 +0.0 +0.1
carbon source Protocatechuic Acid (C) -0.9 -5.1 -0.2 +0.1 +0.1
carbon source butyrate (C) -0.4 -4.1 +0.1 -0.3 -1.2
carbon source Trans-2-methyl-2-butenoic (C) -0.5 -4.9 -0.1 +0.2 -0.5
carbon source 4-Hydroxybenzoic Acid (C) -0.6 -4.2 -0.3 -0.7 -0.0
carbon source Heptanoic (C) -0.4 -3.7 +0.2 +0.2 -2.1
carbon source Heptanoic (C) -0.1 -4.2 +0.1 +0.1 -1.8
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.4 -3.9 +0.3 -0.1 -1.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 -3.7 -0.1 -0.2 -1.7
nitrogen source nitrogen source Ammonium chloride 20mM -0.7 -5.0 -0.1 +0.2 +0.1
carbon source Pimelic (C) -0.3 -4.8 +0.2 -0.3 -0.2
soil soil EcoFAB sample 1; outgrowth in LB +0.4 -3.7 +0.2 -0.6 -1.6
carbon source Suberic (C) -0.7 -4.3 +0.3 -0.1 -0.3
root root EcoFAB sample 2; outgrowth in LB -1.0 -2.8 +0.2 +0.5 -2.1
carbon source butyrate (C) -0.4 -4.2 +0.3 +0.2 -0.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.9 -2.5 -0.1 +0.6 -1.8
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ABZR87_RS04865
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ABZR87_RS04875
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