Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS04775 and ABZR87_RS04780 are separated by 74 nucleotidesABZR87_RS04780 and ABZR87_RS04785 are separated by 416 nucleotidesABZR87_RS04785 and ABZR87_RS04790 are separated by 13 nucleotidesABZR87_RS04790 and ABZR87_RS04795 overlap by 4 nucleotides ABZR87_RS04775: ABZR87_RS04775 - putative Ig domain-containing protein, at 996,647 to 1,001,599 _RS04775 ABZR87_RS04780: ABZR87_RS04780 - nitronate monooxygenase family protein, at 1,001,674 to 1,002,834 _RS04780 ABZR87_RS04785: ABZR87_RS04785 - phosphomethylpyrimidine synthase ThiC, at 1,003,251 to 1,005,146 _RS04785 ABZR87_RS04790: ABZR87_RS04790 - FAD-dependent oxidoreductase, at 1,005,160 to 1,006,305 _RS04790 ABZR87_RS04795: ABZR87_RS04795 - sulfur carrier protein ThiS, at 1,006,302 to 1,006,517 _RS04795
Group Condition ABZR87_RS04775 ABZR87_RS04780 ABZR87_RS04785 ABZR87_RS04790 ABZR87_RS04795
carbon source Lauric (C) +0.0 -0.1 -6.1 N.D. N.D.
nitrogen source nitrogen source Ammonium chloride 20mM +0.0 -0.2 -5.6 N.D. N.D.
carbon source Azelaic (C) +0.0 -0.5 -5.1 N.D. N.D.
carbon source Octanoic (C) -0.1 +0.0 -5.3 N.D. N.D.
carbon source Sebacic (C) +0.0 +0.0 -5.3 N.D. N.D.
carbon source 4-Hydroxybenzoic Acid (C) +0.0 -0.3 -4.7 N.D. N.D.
carbon source Octanoic (C) -0.0 +0.5 -5.5 N.D. N.D.
carbon source Heptanoic (C) -0.0 +0.5 -4.9 N.D. N.D.
carbon source Dodecandioic (C) +0.1 +0.4 -4.9 N.D. N.D.
carbon source Heptanoic (C) +0.0 +0.7 -4.4 N.D. N.D.
carbon source Dodecandioic (C) +0.0 +0.5 -4.2 N.D. N.D.
root root sample 6; outgrowth in LB +0.1 -1.1 -2.4 N.D. N.D.
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) +0.0 -0.2 -3.2 N.D. N.D.
soil soil sample 5; outgrowth in LB +0.2 -1.4 -2.0 N.D. N.D.
nitrogen source nitrogen source Ammonium chloride 20mM +0.0 +0.2 -3.4 N.D. N.D.
carbon source Protocatechuic Acid (C) -0.0 +0.0 -3.2 N.D. N.D.
carbon source Trans-2-methyl-2-butenoic (C) +0.0 -0.7 -2.4 N.D. N.D.
carbon source 3-Hydroxypropionate (C) +0.0 -0.2 -2.8 N.D. N.D.
carbon source 1,2-Propanediol (C) -0.0 -0.0 -2.8 N.D. N.D.
nitrogen source nitrogen source nitrate 20mM +0.0 +0.4 -3.3 N.D. N.D.
soil soil EcoFAB sample 1; outgrowth in LB -0.2 +0.2 -2.8 N.D. N.D.
nitrogen source nitrogen source nitrate 20mM +0.1 +0.4 -3.2 N.D. N.D.
carbon source Protocatechuic Acid (C) -0.0 +0.0 -2.8 N.D. N.D.
rhizosphere rhizosphere sample 2; outgrowth in LB +0.1 -1.2 -1.6 N.D. N.D.
carbon source Sebacic (C) +0.0 +0.2 -2.8 N.D. N.D.
root root sample 5; outgrowth in LB +0.4 -0.9 -2.0 N.D. N.D.
nitrogen source nitrogen source nitrate 5mM +0.0 +0.6 -2.6 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.6 -0.1 -2.1 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +1.2 -1.5 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +1.5 -1.9 N.D. N.D.
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ABZR87_RS04775
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ABZR87_RS04780
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