Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS04755 and ABZR87_RS04760 are separated by 352 nucleotidesABZR87_RS04760 and ABZR87_RS04765 are separated by 291 nucleotidesABZR87_RS04765 and ABZR87_RS04770 are separated by 277 nucleotidesABZR87_RS04770 and ABZR87_RS04775 are separated by 702 nucleotides ABZR87_RS04755: ABZR87_RS04755 - coniferyl aldehyde dehydrogenase, at 989,298 to 990,722 _RS04755 ABZR87_RS04760: ABZR87_RS04760 - GMC family oxidoreductase N-terminal domain-containing protein, at 991,075 to 992,805 _RS04760 ABZR87_RS04765: ABZR87_RS04765 - amino acid ABC transporter substrate-binding protein, at 993,097 to 994,005 _RS04765 ABZR87_RS04770: ABZR87_RS04770 - acyl-CoA dehydrogenase family protein, at 994,283 to 995,944 _RS04770 ABZR87_RS04775: ABZR87_RS04775 - putative Ig domain-containing protein, at 996,647 to 1,001,599 _RS04775
Group Condition ABZR87_RS04755 ABZR87_RS04760 ABZR87_RS04765 ABZR87_RS04770 ABZR87_RS04775
soil soil EcoFAB sample 1; outgrowth in LB -0.2 -0.2 -0.1 -1.1 -0.2
soil soil EcoFAB sample 2; outgrowth in LB +0.0 -0.1 -0.0 -0.4 -0.3
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.0 -0.2 -0.0 -0.6 +0.0
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.1 -0.0 -0.0 -0.6 -0.1
soil soil sample 4; outgrowth in LB -0.1 -0.1 -0.3 -0.2 -0.0
no_plant_soil no_plant_soil sample 3; outgrowth in LB +0.0 -0.2 -0.0 -0.6 +0.1
carbon source Octanoic (C) -0.2 +0.1 -0.1 -0.2 -0.1
root root EcoFAB sample 1; outgrowth in LB +0.1 -0.2 +0.1 -0.4 +0.0
carbon source butyrate (C) -0.0 -0.3 -0.1 +0.2 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.3 -0.3 -0.1 +0.2
root root EcoFAB sample 2; outgrowth in LB +0.0 -0.2 -0.2 +0.2 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 -0.1 +0.2 -0.4 +0.1
no_plant_soil no_plant_soil sample 1; outgrowth in LB +0.0 -0.1 +0.1 -0.3 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.3 -0.0 -0.2 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.1 -0.2 -0.1 +0.3
nitrogen source nitrogen source nitrite 0.5mM +0.3 -0.1 -0.3 -0.1 +0.0
rhizosphere rhizosphere sample 9; outgrowth in LB +0.2 +0.0 -0.2 -0.3 +0.2
rhizosphere rhizosphere sample 1; outgrowth in LB -0.1 +0.2 +0.1 -0.3 +0.1
carbon source Sebacic (C) +0.4 -0.1 -0.0 -0.3 +0.0
root root sample 5; outgrowth in LB +0.0 +0.2 -0.1 -0.5 +0.4
root root sample 6; outgrowth in LB +0.2 +0.2 -0.0 -0.4 +0.1
rhizosphere rhizosphere sample 7; outgrowth in LB +0.1 +0.1 +0.1 -0.3 +0.2
rhizosphere rhizosphere sample 3; outgrowth in LB +0.2 -0.0 -0.3 +0.2 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.1 -0.0 -0.1 +0.3
rhizosphere rhizosphere sample 5; outgrowth in LB +0.1 -0.1 +0.2 -0.1 +0.3
carbon source Azelaic (C) +0.3 -0.1 +0.2 +0.2 +0.0
micoeukaryotes Dictyostellum sp.mixed culture-2 +0.2 +0.2 +0.1 -0.0 +0.1
phage Ra3_1 +0.3 -0.1 +0.1 +0.2 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.1 +0.0 +0.3 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -0.0 +0.2 -0.1 +0.6
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ABZR87_RS04755
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ABZR87_RS04760
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ABZR87_RS04770
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ABZR87_RS04775
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