Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS04715 and ABZR87_RS04720 are separated by 195 nucleotidesABZR87_RS04720 and ABZR87_RS04725 are separated by 42 nucleotidesABZR87_RS04725 and ABZR87_RS04730 are separated by 184 nucleotidesABZR87_RS04730 and ABZR87_RS04735 are separated by 109 nucleotides ABZR87_RS04715: ABZR87_RS04715 - ABC transporter substrate-binding protein, at 983,634 to 984,398 _RS04715 ABZR87_RS04720: ABZR87_RS04720 - IclR family transcriptional regulator, at 984,594 to 985,391 _RS04720 ABZR87_RS04725: ABZR87_RS04725 - universal stress protein, at 985,434 to 985,868 _RS04725 ABZR87_RS04730: ABZR87_RS04730 - thioesterase family protein, at 986,053 to 986,496 _RS04730 ABZR87_RS04735: ABZR87_RS04735 - hypothetical protein, at 986,606 to 986,827 _RS04735
Group Condition ABZR87_RS04715 ABZR87_RS04720 ABZR87_RS04725 ABZR87_RS04730 ABZR87_RS04735
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.4 -2.3 -4.1 +0.3 N.D.
carbon source Octanoic (C) -0.1 -0.3 -2.7 -0.9 N.D.
root root EcoFAB sample 1; outgrowth in LB -0.2 -1.9 -1.1 +0.2 N.D.
soil soil EcoFAB sample 2; outgrowth in LB -0.1 -2.4 -0.5 -0.0 N.D.
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB +0.0 -2.7 +0.6 -0.7 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.2 -0.4 -1.3 -0.2 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.1 -1.6 -0.1 N.D.
soil soil sample 9; outgrowth in LB +0.0 -0.4 -1.0 -0.5 N.D.
carbon source Protocatechuic Acid (C) +0.0 -0.1 -1.3 -0.3 N.D.
carbon source Dodecandioic (C) -0.1 -0.2 -1.1 -0.2 N.D.
soil soil EcoFAB sample 1; outgrowth in LB +0.3 -2.2 +1.1 -0.6 N.D.
carbon source 4-Hydroxybenzoic Acid (C) +0.3 -0.0 -1.2 -0.2 N.D.
root root EcoFAB sample 2; outgrowth in LB -0.0 -2.2 +0.9 +0.2 N.D.
root root sample 6; outgrowth in LB +0.1 +0.5 -0.6 -0.8 N.D.
root root sample 5; outgrowth in LB -0.2 -0.2 -0.9 +0.5 N.D.
nitrogen source nitrogen source nitrate 5mM -0.1 -0.2 -0.9 +0.5 N.D.
no_plant_soil no_plant_soil sample 3; outgrowth in LB -0.0 -0.5 +0.9 -0.4 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.1 -0.9 +1.3 +0.2 N.D.
rhizosphere rhizosphere sample 2; outgrowth in LB -0.1 -0.5 +0.8 +0.3 N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB +0.0 -0.3 +1.5 -0.6 N.D.
carbon source propionate (C) +0.1 +1.2 -0.3 -0.3 N.D.
rhizosphere rhizosphere sample 9; outgrowth in LB -0.2 -0.7 +1.6 -0.0 N.D.
no_plant_soil no_plant_soil sample 1; outgrowth in LB +0.0 -0.3 +1.4 -0.2 N.D.
rhizosphere rhizosphere sample 8; outgrowth in LB +0.0 -0.5 +1.8 -0.3 N.D.
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -0.1 +1.1 -0.1 N.D.
carbon source Protocatechuic Acid (C) +0.2 -0.0 +1.4 -0.1 N.D.
rhizosphere rhizosphere sample 3; outgrowth in LB +0.1 -0.5 +1.8 +0.0 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.1 +1.4 +0.3 N.D.
carbon source Octanoic (C) +0.3 -0.2 +1.4 +0.5 N.D.
root root sample 4; outgrowth in LB +0.0 +0.0 +3.3 -0.4 N.D.
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