Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABZR87_RS04700	ABZR87_RS04705	ABZR87_RS04710	ABZR87_RS04715	ABZR87_RS04720
rhizosphere	rhizosphere EcoFAB sample 1; outgrowth in LB	-1.6	-0.3	-0.4	-0.4	-2.3
rhizosphere	rhizosphere EcoFAB sample 2; outgrowth in LB	-0.8	-0.4	-0.2	+0.0	-2.7
root	root EcoFAB sample 1; outgrowth in LB	-1.5	-0.2	-0.4	-0.2	-1.9
soil	soil EcoFAB sample 2; outgrowth in LB	-1.3	-0.1	-0.2	-0.1	-2.4
root	root EcoFAB sample 2; outgrowth in LB	-1.4	-0.1	+0.0	-0.0	-2.2
soil	soil EcoFAB sample 1; outgrowth in LB	-1.0	+0.1	+0.0	+0.3	-2.2
no_plant_rhizosphere	no_plant_rhizosphere sample 2; outgrowth in LB	-1.2	-0.2	-0.3	-0.1	-0.9
no_plant_rhizosphere	no_plant_rhizosphere sample 3; outgrowth in LB	-0.9	-0.1	-0.0	-0.1	-0.6
rhizosphere	rhizosphere sample 9; outgrowth in LB	-0.6	-0.0	-0.2	-0.2	-0.7
rhizosphere	rhizosphere sample 3; outgrowth in LB	-0.5	-0.2	-0.3	+0.1	-0.5
in planta	Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)	-0.1	+0.0	-0.0	+0.0	-1.1
carbon source	4-Hydroxybenzoic Acid (C)	-0.2	-1.3	+0.1	+0.3	-0.0
carbon source	Valeric (C)	-0.2	-0.4	-0.2	-0.1	-0.2
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.5	-0.1	-0.2	+0.0	-0.3
carbon source	Sebacic (C)	-0.2	-0.2	-0.2	-0.2	-0.2
no_plant_rhizosphere	no_plant_rhizosphere sample 1; outgrowth in LB	-0.3	-0.0	-0.1	-0.2	-0.4
no_plant_soil	no_plant_soil sample 3; outgrowth in LB	-0.4	-0.0	-0.0	-0.0	-0.5
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.5	+0.1	-0.1	+0.0	-0.5
soil	soil sample 4; outgrowth in LB	+0.1	-0.2	-0.1	+0.0	-0.7
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.2	+0.3	+0.1	-0.1	-0.5
carbon source	Octanoic (C)	+0.4	-0.4	-0.0	-0.1	-0.3
root	root sample 5; outgrowth in LB	-0.2	+0.5	-0.1	-0.2	-0.2
carbon source	Octanoic (C)	+0.2	-0.3	+0.0	+0.3	-0.2
nitrogen source	nitrogen source nitrite 0.5mM	+0.2	-0.4	+0.1	+0.3	-0.0
in planta	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB	+0.2	+0.2	-0.2	-0.1	+0.1
root	root sample 6; outgrowth in LB	-0.2	-0.2	+0.2	+0.1	+0.5
no plant control	Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB	+0.0	-0.2	+0.6	+0.3	-0.1
carbon source	propionate (C)	-0.2	-0.2	-0.0	+0.1	+1.2
carbon source	propionate (C)	-0.0	-0.1	-0.1	+0.0	+1.1
in planta	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB	+0.4	+0.6	-0.1	+0.0	+0.0