Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS04665 and ABZR87_RS04670 are separated by 102 nucleotidesABZR87_RS04670 and ABZR87_RS04675 are separated by 54 nucleotidesABZR87_RS04675 and ABZR87_RS04680 are separated by 219 nucleotidesABZR87_RS04680 and ABZR87_RS04685 are separated by 96 nucleotides ABZR87_RS04665: ABZR87_RS04665 - trans-aconitate 2-methyltransferase, at 975,233 to 976,012 _RS04665 ABZR87_RS04670: ABZR87_RS04670 - LysR family transcriptional regulator, at 976,115 to 977,011 _RS04670 ABZR87_RS04675: ABZR87_RS04675 - hypothetical protein, at 977,066 to 977,374 _RS04675 ABZR87_RS04680: ABZR87_RS04680 - nickel/cobalt efflux protein RcnA, at 977,594 to 978,721 _RS04680 ABZR87_RS04685: ABZR87_RS04685 - metal/formaldehyde-sensitive transcriptional repressor, at 978,818 to 979,090 _RS04685
Group Condition ABZR87_RS04665 ABZR87_RS04670 ABZR87_RS04675 ABZR87_RS04680 ABZR87_RS04685
carbon source 4-Hydroxybenzoic Acid (C) -0.3 -0.1 +0.0 -0.4 N.D.
phage Ra3_1 +0.2 -0.1 -0.1 -0.7 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.3 -0.2 -0.1 N.D.
root root EcoFAB sample 2; outgrowth in LB -0.2 -0.1 +0.2 -0.4 N.D.
rhizosphere rhizosphere sample 8; outgrowth in LB -0.3 +0.1 +0.1 -0.3 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 +0.1 +0.0 -0.2 N.D.
rhizosphere rhizosphere sample 7; outgrowth in LB +0.2 -0.2 +0.0 -0.4 N.D.
soil soil EcoFAB sample 1; outgrowth in LB +0.1 -0.7 +0.0 +0.1 N.D.
root root sample 5; outgrowth in LB -0.5 -0.4 -0.2 +0.7 N.D.
soil soil sample 4; outgrowth in LB -0.2 +0.2 -0.1 -0.1 N.D.
rhizosphere rhizosphere sample 9; outgrowth in LB +0.2 -0.0 +0.1 -0.5 N.D.
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.4 +0.6 -0.1 N.D.
nitrogen source nitrogen source nitrite 1mM +0.2 -0.4 +0.3 -0.2 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.7 -0.1 -0.7 N.D.
rhizosphere rhizosphere sample 5; outgrowth in LB -0.3 +0.4 -0.2 +0.2 N.D.
nitrogen source nitrogen source nitrite 0.5mM -0.1 -0.3 +0.0 +0.5 N.D.
root root sample 4; outgrowth in LB +0.1 +0.2 +0.2 -0.2 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.3 -0.1 +0.4 N.D.
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.3 +0.2 -0.1 +0.5 N.D.
carbon source Lauric (C) +0.1 +0.3 +0.2 -0.2 N.D.
carbon source D-Glucose (C) +0.1 +0.4 -0.2 +0.1 N.D.
carbon source Azelaic (C) -0.2 +0.6 -0.3 +0.3 N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB +0.3 +0.4 -0.0 -0.2 N.D.
carbon source Dodecandioic (C) +0.1 +0.3 -0.1 +0.2 N.D.
carbon source Octanoic (C) +0.4 +0.3 -0.0 -0.1 N.D.
rhizosphere rhizosphere sample 3; outgrowth in LB +0.2 +0.7 -0.0 -0.2 N.D.
nitrogen source nitrogen source nitrate 5mM +0.4 -0.0 +0.4 +0.0 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.8 -0.5 +0.2 +0.2 N.D.
micoeukaryotes C.elegans, mixed culture-2 +0.0 +0.1 +0.1 +0.4 N.D.
carbon source Octanoic (C) +0.0 +0.2 +0.2 +0.5 N.D.
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