Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS04605 and ABZR87_RS04610 are separated by 234 nucleotidesABZR87_RS04610 and ABZR87_RS04615 are separated by 325 nucleotidesABZR87_RS04615 and ABZR87_RS04620 are separated by 225 nucleotidesABZR87_RS04620 and ABZR87_RS04625 are separated by 20 nucleotides ABZR87_RS04605: ABZR87_RS04605 - DUF2795 domain-containing protein, at 963,254 to 963,640 _RS04605 ABZR87_RS04610: ABZR87_RS04610 - DNA damage-inducible protein D, at 963,875 to 964,744 _RS04610 ABZR87_RS04615: ABZR87_RS04615 - Rrf2 family transcriptional regulator, at 965,070 to 965,543 _RS04615 ABZR87_RS04620: ABZR87_RS04620 - globin domain-containing protein, at 965,769 to 966,974 _RS04620 ABZR87_RS04625: ABZR87_RS04625 - NnrS family protein, at 966,995 to 968,209 _RS04625
Group Condition ABZR87_RS04605 ABZR87_RS04610 ABZR87_RS04615 ABZR87_RS04620 ABZR87_RS04625
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.0 -0.7 -1.2 -0.2 +0.1
carbon source Octanoic (C) -1.5 -0.5 -0.8 -0.0 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.9 -0.3 -1.3 -0.3 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.8 -0.5 -1.8 +0.0 +0.5
carbon source Azelaic (C) -0.1 -0.2 -1.5 -0.3 -0.4
carbon source Sebacic (C) -0.2 +0.1 -1.8 +0.2 -0.1
soil soil sample 8; outgrowth in LB -1.3 -0.2 -0.3 -0.1 +0.0
rhizosphere rhizosphere sample 6; outgrowth in LB -1.1 +0.1 -0.6 -0.1 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.2 -1.4 -0.1 -0.1
nitrogen source nitrogen source nitrate 5mM -0.5 -0.4 -0.5 -0.3 +0.0
carbon source 4-Hydroxybenzoic Acid (C) -0.4 -0.4 -0.5 -0.1 -0.1
soil soil EcoFAB sample 2; outgrowth in LB -1.1 -0.1 -0.2 +0.0 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.5 -1.0 +0.1 +0.4
root root EcoFAB sample 2; outgrowth in LB -0.8 -0.3 -0.4 +0.4 -0.1
root root sample 5; outgrowth in LB -0.3 -0.1 -0.7 +0.5 -0.3
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -0.4 -0.0 -0.7 +0.2 +0.1
rhizosphere rhizosphere sample 3; outgrowth in LB -0.4 -0.2 -0.9 +0.2 +0.4
carbon source Dodecandioic (C) +0.4 +0.1 -1.0 -0.1 -0.2
carbon source Octanoic (C) +1.2 +0.0 -1.8 +0.0 -0.1
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 +0.2 -1.0 +0.2 +0.3
root root sample 4; outgrowth in LB -1.0 +0.4 +0.3 -0.1 -0.0
root root sample 6; outgrowth in LB -0.5 +0.6 +0.2 -0.4 -0.3
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +0.2 +0.2 -1.1 +0.1 +0.3
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.6 +0.0 -0.8 -0.1 -0.1
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.9 +0.3 -1.4 -0.2 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.6 +0.2 -1.0 +0.1 -0.1
soil soil EcoFAB sample 1; outgrowth in LB +0.8 -0.0 -0.4 -0.4 -0.0
rhizosphere rhizosphere sample 4; outgrowth in LB -0.4 -0.3 +0.5 +0.4 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.2 +0.2 -1.4 +0.1 -0.1
nitrogen source nitrogen source nitrite 0.5mM +0.7 -0.4 +0.3 +0.1 -0.1
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ABZR87_RS04605
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ABZR87_RS04610
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