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Protein
Homologs
Fitness for 5 genes in
Ralstonia sp. UNC404CL21Col
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR87_RS04515 and ABZR87_RS04520 are separated by 15 nucleotides
ABZR87_RS04520 and ABZR87_RS04525 are separated by 655 nucleotides
ABZR87_RS04525 and ABZR87_RS04530 are separated by 137 nucleotides
ABZR87_RS04530 and ABZR87_RS04535 are separated by 942 nucleotides
ABZR87_RS04515: ABZR87_RS04515 - potassium-transporting ATPase subunit KdpB, at 941,010 to 943,235
_RS04515
ABZR87_RS04520: ABZR87_RS04520 - potassium-transporting ATPase subunit KdpC, at 943,251 to 943,874
_RS04520
ABZR87_RS04525: ABZR87_RS04525 - sensor histidine kinase KdpD, at 944,530 to 947,346
_RS04525
ABZR87_RS04530: ABZR87_RS04530 - MetQ/NlpA family lipoprotein, at 947,484 to 948,290
_RS04530
ABZR87_RS04535: ABZR87_RS04535 - EAL domain-containing protein, at 949,233 to 950,447
_RS04535
Group
Condition
ABZR87
_RS04515
ABZR87
_RS04520
ABZR87
_RS04525
ABZR87
_RS04530
ABZR87
_RS04535
carbon source
Sebacic (C)
-0.0
-0.2
-0.4
-0.2
-0.5
micoeukaryotes
Dictyostellum sp.mixed culture-2
-0.4
-0.1
+0.1
-0.2
-0.6
nitrogen source
nitrogen source nitrite 0.5mM
+0.0
-0.0
+0.0
-0.0
-0.8
nitrogen source
nitrogen source nitrite 0.5mM
-0.1
-0.0
-0.1
+0.1
-0.6
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
+0.5
-0.2
-0.1
-0.3
-0.6
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
-0.0
+0.6
-0.0
-0.7
-0.3
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
-0.4
+0.2
-0.1
-0.1
+0.0
no_plant_rhizosphere
no_plant_rhizosphere sample 1; outgrowth in LB
-0.3
-0.3
-0.1
-0.1
+0.4
rhizosphere
rhizosphere sample 3; outgrowth in LB
+0.3
-0.6
-0.1
-0.1
+0.1
soil
soil sample 4; outgrowth in LB
+0.2
-0.2
-0.3
-0.1
+0.2
rhizosphere
rhizosphere sample 2; outgrowth in LB
-0.1
+0.2
+0.0
-0.6
+0.2
soil
soil sample 8; outgrowth in LB
-0.1
+0.0
-0.2
-0.2
+0.4
root
root sample 6; outgrowth in LB
+0.3
-0.4
-0.0
-0.4
+0.4
rhizosphere
rhizosphere sample 5; outgrowth in LB
+0.4
-0.0
-0.2
+0.2
-0.4
no plant control
Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
-0.1
-0.5
+0.3
+0.6
-0.3
rhizosphere
rhizosphere sample 9; outgrowth in LB
+0.1
+0.5
-0.3
+0.0
-0.1
root
root EcoFAB sample 1; outgrowth in LB
-0.2
-0.0
-0.2
+0.1
+0.6
rhizosphere
rhizosphere EcoFAB sample 2; outgrowth in LB
+0.2
-0.1
-0.2
+0.2
+0.3
rhizosphere
rhizosphere sample 6; outgrowth in LB
+0.2
-0.1
-0.2
-0.1
+0.5
rhizosphere
rhizosphere sample 8; outgrowth in LB
+0.2
+0.2
-0.0
-0.3
+0.4
soil
soil EcoFAB sample 1; outgrowth in LB
-0.2
-0.2
-0.3
+0.4
+0.8
carbon source
L-Glutamic (C)
+0.1
+0.2
+0.1
-0.3
+0.4
soil
soil EcoFAB sample 2; outgrowth in LB
+0.2
-0.2
+0.1
+0.1
+0.3
carbon source
4-Hydroxybenzoic Acid (C)
-0.2
+0.3
+0.0
+0.1
+0.5
root
root sample 5; outgrowth in LB
+0.7
+0.3
-0.0
+0.4
-0.2
rhizosphere
rhizosphere EcoFAB sample 1; outgrowth in LB
+0.2
+0.0
-0.1
+0.4
+0.7
carbon source
Heptanoic (C)
+0.7
+0.8
-0.1
+0.2
-0.3
carbon source
Heptanoic (C)
+0.9
+0.9
-0.0
+0.2
-0.3
carbon source
Octanoic (C)
+1.2
+1.7
-0.0
-0.5
-0.1
carbon source
Octanoic (C)
+1.9
+1.3
-0.2
+0.0
-0.0
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