Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS04370 and ABZR87_RS04375 are separated by 102 nucleotidesABZR87_RS04375 and ABZR87_RS04380 are separated by 288 nucleotidesABZR87_RS04380 and ABZR87_RS04385 are separated by 150 nucleotidesABZR87_RS04385 and ABZR87_RS04390 are separated by 78 nucleotides ABZR87_RS04370: ABZR87_RS04370 - inorganic phosphate transporter, at 911,893 to 913,479 _RS04370 ABZR87_RS04375: ABZR87_RS04375 - acylphosphatase, at 913,582 to 913,869 _RS04375 ABZR87_RS04380: ABZR87_RS04380 - ABC transporter permease subunit, at 914,158 to 915,942 _RS04380 ABZR87_RS04385: ABZR87_RS04385 - AAA-associated domain-containing protein, at 916,093 to 917,466 _RS04385 ABZR87_RS04390: ABZR87_RS04390 - autotransporter outer membrane beta-barrel domain-containing protein, at 917,545 to 921,036 _RS04390
Group Condition ABZR87_RS04370 ABZR87_RS04375 ABZR87_RS04380 ABZR87_RS04385 ABZR87_RS04390
carbon source Octanoic (C) +0.2 -1.5 -1.7 -1.6 -0.1
carbon source Sebacic (C) -0.2 +0.5 -1.4 -2.5 -0.1
carbon source Octanoic (C) +0.2 -0.1 -1.7 -1.6 -0.0
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.1 -1.8 -0.2 -0.4 +0.1
carbon source Dodecandioic (C) +0.0 -0.4 -0.8 -1.1 -0.0
carbon source Dodecandioic (C) +0.0 -0.3 -0.7 -1.1 +0.0
carbon source Lauric (C) -0.2 -0.3 -0.6 -0.6 -0.0
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.1 -0.3 -0.5 -0.5 -0.2
carbon source Heptanoic (C) +0.0 -0.1 -0.6 -0.7 -0.1
soil soil sample 5; outgrowth in LB -0.0 -0.7 -0.3 -0.4 -0.0
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.1 -0.5 -0.5 -0.2 +0.1
carbon source Heptanoic (C) +0.1 -0.3 -0.5 -0.5 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.7 +0.0 -0.6 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.4 -0.0 -0.6 +0.0
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 -0.1 -0.3 -0.6 -0.2
root root EcoFAB sample 2; outgrowth in LB -0.1 -0.4 -0.4 -0.3 +0.1
rhizosphere rhizosphere sample 9; outgrowth in LB +0.1 -0.9 -0.2 -0.3 +0.1
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB +0.1 -0.9 -0.2 +0.1 -0.1
carbon source D-Xylose (C) +0.0 -0.3 -0.5 -0.3 -0.0
rhizosphere rhizosphere sample 6; outgrowth in LB +0.1 -0.8 +0.1 -0.3 -0.0
root root sample 4; outgrowth in LB +0.2 -0.8 +0.0 -0.3 +0.2
soil soil sample 1; outgrowth in LB +0.1 -0.5 -0.2 -0.2 +0.2
root root sample 6; outgrowth in LB -0.0 -1.0 +0.7 -0.2 -0.0
carbon source 4-Hydroxybenzoic Acid (C) +0.2 +0.3 -0.4 -0.4 -0.1
rhizosphere rhizosphere sample 2; outgrowth in LB +0.2 -0.5 +0.1 -0.3 +0.2
nitrogen source nitrogen source nitrite 5mM -0.2 -0.5 +0.2 +0.2 -0.0
rhizosphere rhizosphere sample 3; outgrowth in LB +0.0 -0.5 -0.1 +0.1 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.4 -0.1 +0.3 +0.1
carbon source Protocatechuic Acid (C) -0.1 -0.4 +0.6 +0.6 +0.0
carbon source Protocatechuic Acid (C) -0.2 -0.0 +0.8 +0.5 -0.0
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