Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS04355 and ABZR87_RS04360 are separated by 60 nucleotidesABZR87_RS04360 and ABZR87_RS04365 are separated by 140 nucleotidesABZR87_RS04365 and ABZR87_RS04370 are separated by 83 nucleotidesABZR87_RS04370 and ABZR87_RS04375 are separated by 102 nucleotides ABZR87_RS04355: ABZR87_RS04355 - CoA transferase, at 908,451 to 909,848 _RS04355 ABZR87_RS04360: ABZR87_RS04360 - 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ, at 909,909 to 910,766 _RS04360 ABZR87_RS04365: ABZR87_RS04365 - polyphosphate kinase 2, at 910,907 to 911,809 _RS04365 ABZR87_RS04370: ABZR87_RS04370 - inorganic phosphate transporter, at 911,893 to 913,479 _RS04370 ABZR87_RS04375: ABZR87_RS04375 - acylphosphatase, at 913,582 to 913,869 _RS04375
Group Condition ABZR87_RS04355 ABZR87_RS04360 ABZR87_RS04365 ABZR87_RS04370 ABZR87_RS04375
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.1 +0.3 +0.0 -0.1 -1.8
carbon source Octanoic (C) -0.1 -0.1 +0.0 +0.2 -1.5
nitrogen source nitrogen source nitrite 5mM -0.3 -0.3 -0.1 -0.2 -0.5
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -0.2 -0.0 -0.2 +0.1 -0.9
root root sample 6; outgrowth in LB -0.0 -0.3 +0.2 -0.0 -1.0
soil soil sample 5; outgrowth in LB -0.1 -0.3 +0.0 -0.0 -0.7
carbon source Disodium Glutarate (C) -0.2 -0.1 -0.1 -0.1 -0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -0.3 -0.2 -0.1 -0.7
root root sample 4; outgrowth in LB -0.1 -0.3 +0.1 +0.2 -0.8
rhizosphere rhizosphere sample 9; outgrowth in LB +0.1 -0.1 -0.0 +0.1 -0.9
carbon source propionate (C) +0.0 -0.4 -0.1 +0.1 -0.4
carbon source Hexanoic (C) +0.2 -0.3 -0.2 -0.1 -0.4
micoeukaryotes Acanthamoeba sp., muxed culture-1 +0.1 -0.2 -0.1 -0.1 -0.4
root root EcoFAB sample 2; outgrowth in LB -0.2 -0.2 +0.2 -0.1 -0.4
nitrogen source nitrogen source nitrate 5mM +0.3 -0.4 +0.1 -0.0 -0.6
carbon source succinate (C) +0.2 -0.3 -0.1 +0.0 -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.1 -0.2 -0.2 -0.4
soil soil sample 3; outgrowth in LB +0.0 -0.3 +0.2 -0.0 -0.4
rhizosphere rhizosphere sample 6; outgrowth in LB -0.0 +0.2 -0.0 +0.1 -0.8
carbon source L-Glutamic (C) -0.2 -0.1 -0.3 -0.2 +0.3
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.1 +0.2 +0.2 -0.1 -0.5
soil soil sample 1; outgrowth in LB -0.1 -0.1 +0.2 +0.1 -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -0.6 +0.1 -0.1 +0.2
rhizosphere rhizosphere sample 5; outgrowth in LB +0.0 -0.4 +0.0 -0.1 +0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.5 +0.2 +0.2 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.6 -0.1 +0.0 +0.2 -0.4
phage Ra3_1 +0.3 -0.3 +0.1 -0.0 +0.3
nitrogen source nitrogen source nitrite 1mM +0.3 -0.1 +0.0 -0.2 +0.3
root root sample 5; outgrowth in LB -0.1 +0.1 +0.2 -0.0 +0.6
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.7 +0.4 +0.7 +0.0 -0.1
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ABZR87_RS04360
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