Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS04275 and ABZR87_RS04280 are separated by 76 nucleotidesABZR87_RS04280 and ABZR87_RS04285 are separated by 8 nucleotidesABZR87_RS04285 and ABZR87_RS04290 are separated by 16 nucleotidesABZR87_RS04290 and ABZR87_RS04295 are separated by 633 nucleotides ABZR87_RS04275: ABZR87_RS04275 - DUF3717 domain-containing protein, at 892,070 to 892,297 _RS04275 ABZR87_RS04280: ABZR87_RS04280 - response regulator transcription factor, at 892,374 to 893,084 _RS04280 ABZR87_RS04285: ABZR87_RS04285 - sensor histidine kinase, at 893,093 to 894,766 _RS04285 ABZR87_RS04290: ABZR87_RS04290 - SET domain-containing protein-lysine N-methyltransferase, at 894,783 to 895,322 _RS04290 ABZR87_RS04295: ABZR87_RS04295 - HU family DNA-binding protein, at 895,956 to 896,234 _RS04295
Group Condition ABZR87_RS04275 ABZR87_RS04280 ABZR87_RS04285 ABZR87_RS04290 ABZR87_RS04295
carbon source Octanoic (C) -0.7 -0.8 +0.1 -1.5 -3.4
carbon source Sebacic (C) -0.5 +0.1 -0.5 -0.5 -4.0
carbon source Octanoic (C) +0.1 +0.0 -0.3 -1.6 -2.2
carbon source Azelaic (C) -0.1 -0.1 +0.0 -0.8 -2.5
carbon source Heptanoic (C) -0.3 +0.2 -0.1 -0.4 -2.7
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.2 -0.0 -0.3 -0.0 -2.6
carbon source Heptanoic (C) +0.1 -0.2 -0.1 -0.2 -2.4
micoeukaryotes C.elegans, mixed culture-2 +0.0 -0.3 -0.2 -0.1 -1.3
carbon source succinate (C) -0.0 -0.1 -0.3 -0.2 -1.1
phage Ra1_0.1 +0.0 +0.0 +0.1 -0.2 -1.5
micoeukaryotes Acanthamoeba sp., muxed culture-2 +0.2 -0.5 -0.6 -0.1 -0.5
phage Ra3_1 -0.0 +0.2 -0.2 -0.4 -1.0
carbon source propionate (C) -0.1 -0.3 -0.1 +0.1 -1.1
phage Ra1_0.01 +0.0 +0.2 +0.0 -0.1 -1.5
phage Ra3_0.1 +0.1 +0.1 +0.0 -0.1 -1.4
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +0.1 +0.4 +0.1 +0.3 -0.8
carbon source Disodium Glutarate (C) -0.1 -0.3 -0.3 +0.9 -0.1
carbon source Lauric (C) +0.0 +0.7 +0.4 -0.0 -0.7
rhizosphere rhizosphere sample 4; outgrowth in LB +0.1 -0.1 -0.2 -0.4 +1.2
rhizosphere rhizosphere sample 3; outgrowth in LB -0.0 -0.1 +0.1 -0.2 +1.1
rhizosphere rhizosphere sample 8; outgrowth in LB +0.1 -0.0 -0.1 -0.5 +1.5
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.2 +0.1 +0.2 +1.0 -0.5
rhizosphere rhizosphere sample 9; outgrowth in LB +0.1 -0.3 -0.2 -0.3 +1.9
rhizosphere rhizosphere sample 6; outgrowth in LB +0.1 +0.0 -0.2 -0.2 +1.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -0.2 +0.3 -0.0 +1.0
rhizosphere rhizosphere sample 7; outgrowth in LB +0.1 -0.1 +0.1 -0.4 +1.8
root root sample 6; outgrowth in LB +0.1 +0.1 +0.2 -0.4 +1.7
rhizosphere rhizosphere sample 1; outgrowth in LB +0.1 +0.2 +0.0 -0.4 +1.9
root root sample 4; outgrowth in LB +0.5 +0.2 -0.3 -0.1 +1.9
rhizosphere rhizosphere sample 2; outgrowth in LB +0.6 -0.3 +0.4 -0.2 +1.7
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