Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS04115 and ABZR87_RS04120 are separated by 37 nucleotidesABZR87_RS04120 and ABZR87_RS04125 overlap by 1 nucleotidesABZR87_RS04125 and ABZR87_RS04130 are separated by 192 nucleotidesABZR87_RS04130 and ABZR87_RS04135 are separated by 86 nucleotides ABZR87_RS04115: ABZR87_RS04115 - ParA family protein, at 862,686 to 863,471 _RS04115 ABZR87_RS04120: ABZR87_RS04120 - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 863,509 to 864,177 _RS04120 ABZR87_RS04125: ABZR87_RS04125 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG, at 864,177 to 866,126 _RS04125 ABZR87_RS04130: ABZR87_RS04130 - LysR family transcriptional regulator, at 866,319 to 867,239 _RS04130 ABZR87_RS04135: ABZR87_RS04135 - aldo/keto reductase, at 867,326 to 868,339 _RS04135
Group Condition ABZR87_RS04115 ABZR87_RS04120 ABZR87_RS04125 ABZR87_RS04130 ABZR87_RS04135
carbon source Octanoic (C) N.D. -2.7 -2.9 -0.5 +0.2
carbon source Octanoic (C) N.D. -2.4 -3.6 +0.0 +0.1
carbon source Dodecandioic (C) N.D. -2.0 -3.9 +0.2 -0.1
carbon source Sebacic (C) N.D. -1.5 -2.9 -0.4 -0.0
carbon source Sebacic (C) N.D. -1.2 -3.5 -0.0 -0.1
carbon source Heptanoic (C) N.D. -0.6 -3.9 +0.1 -0.2
carbon source Heptanoic (C) N.D. -0.4 -4.3 -0.1 +0.2
carbon source Dodecandioic (C) N.D. -1.5 -3.4 +0.3 +0.1
carbon source Lauric (C) N.D. -0.6 -3.4 -0.2 -0.0
carbon source Azelaic (C) N.D. -0.3 -3.7 -0.1 +0.1
soil soil EcoFAB sample 1; outgrowth in LB N.D. -2.2 -1.8 +0.3 -0.2
carbon source Protocatechuic Acid (C) N.D. -0.9 -2.6 -0.2 +0.1
carbon source 4-Hydroxybenzoic Acid (C) N.D. -1.2 -2.9 +0.4 +0.2
nitrogen source nitrogen source nitrite 5mM N.D. -0.1 -3.0 -0.1 -0.1
carbon source butyrate (C) N.D. -1.2 -2.0 -0.0 -0.0
no_plant_soil no_plant_soil sample 2; outgrowth in LB N.D. -0.5 -2.5 -0.1 -0.1
micoeukaryotes Dictyostellum sp.mixed culture-2 N.D. +0.0 -3.0 -0.0 -0.2
nitrogen source nitrogen source nitrate 5mM N.D. -0.2 -2.9 +0.0 -0.0
micoeukaryotes Dictyostellum sp.mixed culture-1 N.D. +0.0 -2.7 -0.1 -0.2
nitrogen source nitrogen source nitrate 20mM N.D. -0.1 -2.6 -0.3 -0.0
no_plant_soil no_plant_soil sample 1; outgrowth in LB N.D. -0.0 -2.5 -0.2 -0.1
carbon source adipate (C) N.D. -0.1 -2.4 -0.1 -0.2
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB N.D. -1.0 -1.3 -0.3 -0.2
nitrogen source nitrogen source Ammonium chloride 20mM N.D. +0.2 -2.8 -0.1 -0.0
no_plant_soil no_plant_soil sample 3; outgrowth in LB N.D. -0.3 -2.4 +0.1 -0.1
carbon source Beta-alanine (C) N.D. -0.4 -2.3 -0.0 +0.0
micoeukaryotes C.elegans, mixed culture-1 N.D. +0.1 -2.3 -0.1 -0.3
carbon source Beta-alanine (C) N.D. -0.2 -2.4 +0.1 +0.0
micoeukaryotes Acanthamoeba sp., muxed culture-2 N.D. +0.4 -2.4 -0.1 -0.0
nitrogen source nitrogen source nitrite 5mM N.D. +0.6 -2.3 -0.1 +0.2
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ABZR87_RS04120
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