Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS03965 and ABZR87_RS03970 are separated by 130 nucleotidesABZR87_RS03970 and ABZR87_RS03975 are separated by 716 nucleotidesABZR87_RS03975 and ABZR87_RS03980 are separated by 590 nucleotidesABZR87_RS03980 and ABZR87_RS03985 are separated by 94 nucleotides ABZR87_RS03965: ABZR87_RS03965 - branched-chain amino acid ABC transporter substrate-binding protein, at 826,715 to 827,860 _RS03965 ABZR87_RS03970: ABZR87_RS03970 - trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase, at 827,991 to 831,983 _RS03970 ABZR87_RS03975: ABZR87_RS03975 - primosomal protein N', at 832,700 to 834,997 _RS03975 ABZR87_RS03980: ABZR87_RS03980 - uroporphyrinogen decarboxylase, at 835,588 to 836,682 _RS03980 ABZR87_RS03985: ABZR87_RS03985 - cupin domain-containing protein, at 836,777 to 837,262 _RS03985
Group Condition ABZR87_RS03965 ABZR87_RS03970 ABZR87_RS03975 ABZR87_RS03980 ABZR87_RS03985
carbon source Octanoic (C) -0.2 -1.2 N.D. N.D. -0.0
carbon source Octanoic (C) -0.3 -1.0 N.D. N.D. -0.2
carbon source 4-Hydroxybenzoic Acid (C) -0.0 -1.2 N.D. N.D. -0.1
carbon source Heptanoic (C) -0.0 -0.8 N.D. N.D. -0.3
no_plant_soil no_plant_soil sample 3; outgrowth in LB +0.1 -1.0 N.D. N.D. -0.1
root root sample 6; outgrowth in LB -0.3 -0.6 N.D. N.D. -0.1
soil soil EcoFAB sample 1; outgrowth in LB +0.2 -1.2 N.D. N.D. +0.1
no_plant_soil no_plant_soil sample 1; outgrowth in LB +0.0 -0.8 N.D. N.D. -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.4 N.D. N.D. -0.2
rhizosphere rhizosphere sample 9; outgrowth in LB -0.1 -0.5 N.D. N.D. -0.1
rhizosphere rhizosphere sample 2; outgrowth in LB -0.1 -0.6 N.D. N.D. +0.0
carbon source Heptanoic (C) +0.0 -0.7 N.D. N.D. -0.0
soil soil sample 3; outgrowth in LB -0.0 -0.6 N.D. N.D. +0.1
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +0.3 -0.8 N.D. N.D. +0.1
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.0 -0.7 N.D. N.D. +0.2
rhizosphere rhizosphere sample 1; outgrowth in LB +0.1 -0.7 N.D. N.D. +0.2
rhizosphere rhizosphere sample 7; outgrowth in LB -0.3 -0.3 N.D. N.D. +0.2
soil soil EcoFAB sample 2; outgrowth in LB +0.2 -0.7 N.D. N.D. +0.1
root root EcoFAB sample 2; outgrowth in LB +0.4 -0.6 N.D. N.D. -0.1
rhizosphere rhizosphere sample 4; outgrowth in LB -0.0 -0.5 N.D. N.D. +0.2
root root EcoFAB sample 1; outgrowth in LB +0.4 -0.6 N.D. N.D. -0.1
carbon source Azelaic (C) +0.1 -0.5 N.D. N.D. +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.4 N.D. N.D. +0.2
micoeukaryotes Dictyostellum sp.mixed culture-2 +0.5 -0.2 N.D. N.D. -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 -0.3 N.D. N.D. +0.1
micoeukaryotes C.elegans, mixed culture-1 +0.6 -0.3 N.D. N.D. -0.0
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.7 -0.2 N.D. N.D. +0.1
carbon source Beta-alanine (C) +0.1 +0.7 N.D. N.D. -0.1
carbon source Beta-alanine (C) +0.1 +0.8 N.D. N.D. +0.0
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +2.4 +0.8 N.D. N.D. -0.1
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