Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS03570 and ABZR87_RS03575 are separated by 6 nucleotidesABZR87_RS03575 and ABZR87_RS03580 are separated by 243 nucleotidesABZR87_RS03580 and ABZR87_RS03585 are separated by 360 nucleotidesABZR87_RS03585 and ABZR87_RS03590 are separated by 189 nucleotides ABZR87_RS03570: ABZR87_RS03570 - MFS transporter, at 749,474 to 750,940 _RS03570 ABZR87_RS03575: ABZR87_RS03575 - undecaprenyl-diphosphatase, at 750,947 to 751,546 _RS03575 ABZR87_RS03580: ABZR87_RS03580 - sensor domain-containing diguanylate cyclase, at 751,790 to 753,157 _RS03580 ABZR87_RS03585: ABZR87_RS03585 - LysR family transcriptional regulator, at 753,518 to 754,435 _RS03585 ABZR87_RS03590: ABZR87_RS03590 - SDR family oxidoreductase, at 754,625 to 755,374 _RS03590
Group Condition ABZR87_RS03570 ABZR87_RS03575 ABZR87_RS03580 ABZR87_RS03585 ABZR87_RS03590
carbon source Octanoic (C) -0.4 -0.2 -0.4 -0.3 -0.3
root root EcoFAB sample 1; outgrowth in LB -0.3 -0.3 -0.1 -0.3 -0.6
carbon source Octanoic (C) -0.3 -0.5 +0.0 -0.2 -0.5
carbon source Azelaic (C) +0.2 -0.1 -0.1 -0.1 -1.2
carbon source Heptanoic (C) +0.1 -0.0 -0.1 -0.3 -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 -0.1 +0.2 -0.2 -0.7
soil soil EcoFAB sample 1; outgrowth in LB +0.3 -0.2 -0.1 -0.1 -0.6
soil soil sample 1; outgrowth in LB -0.2 -0.1 +0.1 -0.1 -0.3
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.1 -0.2 +0.0 -0.5
nitrogen source nitrogen source nitrite 1mM +0.2 -0.4 -0.1 +0.0 -0.3
root root sample 6; outgrowth in LB +0.0 -0.3 +0.2 -0.3 -0.1
carbon source D-Glucose (C) +0.1 +0.1 -0.0 -0.0 -0.6
rhizosphere rhizosphere sample 1; outgrowth in LB +0.1 -0.1 +0.1 +0.1 -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 +0.2 -0.1 +0.1 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.3 -0.4 +0.3 +0.2
rhizosphere rhizosphere sample 2; outgrowth in LB -0.1 +0.2 +0.1 -0.3 -0.2
carbon source Sebacic (C) +0.1 -0.6 -0.1 -0.2 +0.6
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.1 -0.3 +0.1 -0.3 +0.2
nitrogen source nitrogen source nitrite 0.5mM +0.2 -0.2 +0.1 +0.0 -0.4
carbon source Disodium Glutarate (C) +0.1 +0.1 +0.1 +0.1 -0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 -0.1 -0.1 -0.2 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.0 +0.0 -0.5 +0.5
nitrogen source nitrogen source nitrite 0.5mM -0.5 -0.0 +0.1 +0.0 +0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 -0.2 -0.1 -0.1 +0.6
carbon source Dodecandioic (C) +0.2 +0.2 +0.3 -0.2 -0.3
rhizosphere rhizosphere sample 9; outgrowth in LB +0.5 -0.0 -0.1 -0.1 +0.2
carbon source Protocatechuic Acid (C) -0.1 +0.1 +0.0 -0.1 +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.2 +0.0 -0.1 +0.6
carbon source 4-Hydroxybenzoic Acid (C) +0.2 -0.0 +0.1 -0.3 +1.1
root root sample 5; outgrowth in LB +0.4 +0.3 +0.4 +0.0 +0.6
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