Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS03415 and ABZR87_RS03420 overlap by 4 nucleotidesABZR87_RS03420 and ABZR87_RS03425 overlap by 20 nucleotidesABZR87_RS03425 and ABZR87_RS03430 are separated by 1 nucleotidesABZR87_RS03430 and ABZR87_RS03435 are separated by 164 nucleotides ABZR87_RS03415: ABZR87_RS03415 - GspH/FimT family pseudopilin, at 713,245 to 713,757 _RS03415 ABZR87_RS03420: ABZR87_RS03420 - type II secretion system minor pseudopilin GspI, at 713,754 to 714,164 _RS03420 ABZR87_RS03425: ABZR87_RS03425 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 714,145 to 714,888 _RS03425 ABZR87_RS03430: ABZR87_RS03430 - type II secretion system minor pseudopilin GspK, at 714,890 to 715,969 _RS03430 ABZR87_RS03435: ABZR87_RS03435 - type II secretion system protein GspL, at 716,134 to 717,570 _RS03435
Group Condition ABZR87_RS03415 ABZR87_RS03420 ABZR87_RS03425 ABZR87_RS03430 ABZR87_RS03435
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.1 -4.1 -4.3 -3.7 -3.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.2 -4.5 -3.9 -3.5 -3.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.0 -3.4 -3.5 -3.5 -3.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.0 -4.6 -3.3 -2.6 -2.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.7 -2.6 -3.8 -3.3 -3.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.3 -1.7 -2.7 -3.6 -4.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.7 -4.7 -3.2 -2.3 -2.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.8 -4.5 -1.5 -2.3 -2.8
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.1 -2.3 -3.5 -2.4 -2.3
root root sample 6; outgrowth in LB -1.8 -2.9 -2.1 -1.3 -3.3
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -1.2 -4.1 -1.6 -1.7 -2.2
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.7 -3.8 -2.9 -1.5 -1.9
no_plant_soil no_plant_soil sample 1; outgrowth in LB -1.2 -1.7 -2.5 -2.6 -2.6
nitrogen source nitrogen source nitrite 5mM -0.6 -3.5 -2.2 -2.0 -2.0
rhizosphere rhizosphere sample 2; outgrowth in LB -1.1 -3.1 -1.8 -1.6 -2.4
root root sample 5; outgrowth in LB -1.6 -3.2 -1.7 -1.8 -1.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.0 -0.4 -2.6 -2.5 -2.3
nitrogen source nitrogen source nitrite 5mM -0.6 -3.6 -1.8 -1.5 -1.7
rhizosphere rhizosphere sample 6; outgrowth in LB -1.2 -1.8 -2.2 -1.9 -1.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.9 +0.1 -1.9 -2.6 -2.6
no_plant_soil no_plant_soil sample 3; outgrowth in LB -1.2 -0.9 -2.0 -2.5 -2.1
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.8 -0.3 -2.2 -2.7 -2.6
rhizosphere rhizosphere sample 1; outgrowth in LB -1.0 -3.4 -1.4 -1.4 -0.7
no_plant_soil no_plant_soil sample 2; outgrowth in LB -1.2 -1.2 -1.9 -1.8 -1.4
soil soil sample 1; outgrowth in LB -1.0 -2.4 -1.2 -1.4 -1.2
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.2 -4.7 -0.8 -0.4 -0.7
root root EcoFAB sample 2; outgrowth in LB -0.6 -3.9 -1.1 -0.6 -0.4
rhizosphere rhizosphere sample 4; outgrowth in LB -0.9 -1.9 -1.2 -1.1 -1.2
soil soil sample 5; outgrowth in LB -1.1 -1.1 -1.3 -1.3 -1.4
soil soil EcoFAB sample 2; outgrowth in LB +1.3 +0.1 +1.6 +1.7 +1.5
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