Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS03075 and ABZR87_RS03080 are separated by 8 nucleotidesABZR87_RS03080 and ABZR87_RS03085 are separated by 665 nucleotidesABZR87_RS03085 and ABZR87_RS03090 are separated by 282 nucleotidesABZR87_RS03090 and ABZR87_RS03095 are separated by 29 nucleotides ABZR87_RS03075: ABZR87_RS03075 - AGE family epimerase/isomerase, at 645,993 to 647,246 _RS03075 ABZR87_RS03080: ABZR87_RS03080 - MFS transporter, at 647,255 to 648,556 _RS03080 ABZR87_RS03085: ABZR87_RS03085 - ABC transporter substrate-binding protein, at 649,222 to 650,313 _RS03085 ABZR87_RS03090: ABZR87_RS03090 - helix-turn-helix transcriptional regulator, at 650,596 to 651,393 _RS03090 ABZR87_RS03095: ABZR87_RS03095 - ATP-binding protein, at 651,423 to 652,763 _RS03095
Group Condition ABZR87_RS03075 ABZR87_RS03080 ABZR87_RS03085 ABZR87_RS03090 ABZR87_RS03095
carbon source Lauric (C) -6.0 +0.0 +0.0 +0.0 +0.1
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -4.8 -0.1 -0.2 -0.1 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -4.3 -0.1 +0.0 +0.4 -0.2
carbon source Octanoic (C) -4.6 +0.3 +0.2 -0.2 +0.3
carbon source Octanoic (C) -4.2 +0.1 -0.1 -0.0 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -3.5 -0.1 -0.0 +0.1 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -3.5 -0.0 -0.0 +0.2 -0.0
carbon source Heptanoic (C) -3.6 +0.1 +0.1 -0.0 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -3.8 -0.1 +0.0 +0.3 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -3.3 +0.0 +0.0 -0.1 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -3.1 -0.1 +0.1 -0.1 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -3.1 -0.0 +0.1 +0.0 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -3.2 +0.2 -0.0 +0.1 +0.0
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -2.9 -0.1 +0.1 +0.2 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -3.5 +0.5 +0.2 +0.2 -0.1
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB +3.1 -0.2 +0.0 +0.2 +0.1
root root EcoFAB sample 1; outgrowth in LB +3.5 -0.0 +0.1 -0.1 +0.1
rhizosphere rhizosphere sample 6; outgrowth in LB +3.8 -0.0 +0.0 -0.1 +0.0
rhizosphere rhizosphere sample 8; outgrowth in LB +4.5 -0.1 +0.1 +0.0 -0.0
rhizosphere rhizosphere sample 9; outgrowth in LB +4.4 -0.2 +0.5 -0.1 -0.0
root root sample 4; outgrowth in LB +4.3 +0.0 +0.3 -0.0 +0.1
root root sample 5; outgrowth in LB +4.9 -0.1 -0.1 +0.2 -0.1
root root sample 6; outgrowth in LB +4.1 +0.2 +0.3 +0.1 +0.1
root root EcoFAB sample 2; outgrowth in LB +5.6 -0.3 -0.2 -0.3 +0.1
rhizosphere rhizosphere sample 2; outgrowth in LB +4.7 +0.2 +0.1 +0.3 -0.2
rhizosphere rhizosphere sample 5; outgrowth in LB +4.8 +0.2 -0.0 +0.2 +0.0
rhizosphere rhizosphere sample 4; outgrowth in LB +5.3 +0.1 -0.2 +0.1 -0.1
rhizosphere rhizosphere sample 3; outgrowth in LB +5.4 -0.0 +0.2 -0.3 +0.2
rhizosphere rhizosphere sample 1; outgrowth in LB +6.2 +0.0 +0.1 -0.2 -0.1
rhizosphere rhizosphere sample 7; outgrowth in LB +6.1 -0.0 +0.3 +0.2 +0.0
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ABZR87_RS03075
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ABZR87_RS03080
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