Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS02895 and ABZR87_RS02900 are separated by 8 nucleotidesABZR87_RS02900 and ABZR87_RS02905 are separated by 6 nucleotidesABZR87_RS02905 and ABZR87_RS02910 are separated by 8 nucleotidesABZR87_RS02910 and ABZR87_RS02915 overlap by 4 nucleotides ABZR87_RS02895: ABZR87_RS02895 - YfaP family protein, at 600,763 to 601,554 _RS02895 ABZR87_RS02900: ABZR87_RS02900 - DUF2300 domain-containing protein, at 601,563 to 603,293 _RS02900 ABZR87_RS02905: ABZR87_RS02905 - alpha-2-macroglobulin, at 603,300 to 608,084 _RS02905 ABZR87_RS02910: ABZR87_RS02910 - DUF1175 family protein, at 608,093 to 608,797 _RS02910 ABZR87_RS02915: ABZR87_RS02915 - DUF2138 domain-containing protein, at 608,794 to 610,623 _RS02915
Group Condition ABZR87_RS02895 ABZR87_RS02900 ABZR87_RS02905 ABZR87_RS02910 ABZR87_RS02915
carbon source Octanoic (C) +0.3 -0.8 -0.3 -0.1 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.1 -0.0 -0.6 -0.4
carbon source acetate (C) -0.1 -0.3 -0.1 -0.0 -0.2
carbon source butyrate (C) -0.2 -0.2 -0.0 -0.2 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 -0.3 +0.1 -0.1 -0.3
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +0.1 -0.5 -0.1 -0.2 +0.1
rhizosphere rhizosphere sample 1; outgrowth in LB -0.1 -0.4 +0.1 +0.1 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.1 +0.0 +0.1 -0.3
carbon source Protocatechuic Acid (C) +0.1 -0.3 -0.1 +0.2 -0.0
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.1 +0.2 -0.1 -0.3 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.2 +0.0 +0.3 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 -0.0 -0.1 -0.2 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.3 +0.1 -0.3 +0.2
carbon source Valeric (C) +0.1 -0.1 -0.1 -0.2 +0.2
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 -0.5 +0.1 -0.0 -0.1
phage Ra1_0.1 -0.3 +0.2 -0.0 -0.0 +0.2
carbon source Octanoic (C) +0.2 -0.0 -0.0 +0.3 -0.3
carbon source Azelaic (C) -0.1 +0.3 +0.1 -0.2 +0.0
carbon source Sebacic (C) +0.4 -0.1 +0.1 -0.1 -0.1
no_plant_soil no_plant_soil sample 1; outgrowth in LB +0.0 +0.2 +0.1 -0.2 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.3 -0.1 +0.2 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.0 +0.2 +0.2 -0.2
root root sample 4; outgrowth in LB +0.2 +0.2 +0.2 -0.1 +0.1
rhizosphere rhizosphere sample 2; outgrowth in LB -0.0 +0.4 +0.0 +0.2 +0.1
root root sample 5; outgrowth in LB -0.1 -0.1 -0.0 +0.5 +0.4
nitrogen source nitrogen source nitrate 5mM +0.1 -0.1 +0.2 +0.4 +0.0
root root EcoFAB sample 1; outgrowth in LB +0.2 -0.1 +0.2 +0.3 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.3 +0.1 +0.3 -0.0
carbon source 4-Hydroxybenzoic Acid (C) +0.3 +0.4 +0.2 +0.0 -0.1
carbon source Sebacic (C) -0.1 +0.1 +0.2 +0.4 +0.3
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ABZR87_RS02895
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ABZR87_RS02900
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ABZR87_RS02910
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ABZR87_RS02915
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