Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS02890 and ABZR87_RS02895 are separated by 10 nucleotidesABZR87_RS02895 and ABZR87_RS02900 are separated by 8 nucleotidesABZR87_RS02900 and ABZR87_RS02905 are separated by 6 nucleotidesABZR87_RS02905 and ABZR87_RS02910 are separated by 8 nucleotides ABZR87_RS02890: ABZR87_RS02890 - DUF2135 domain-containing protein, at 599,910 to 600,752 _RS02890 ABZR87_RS02895: ABZR87_RS02895 - YfaP family protein, at 600,763 to 601,554 _RS02895 ABZR87_RS02900: ABZR87_RS02900 - DUF2300 domain-containing protein, at 601,563 to 603,293 _RS02900 ABZR87_RS02905: ABZR87_RS02905 - alpha-2-macroglobulin, at 603,300 to 608,084 _RS02905 ABZR87_RS02910: ABZR87_RS02910 - DUF1175 family protein, at 608,093 to 608,797 _RS02910
Group Condition ABZR87_RS02890 ABZR87_RS02895 ABZR87_RS02900 ABZR87_RS02905 ABZR87_RS02910
carbon source Octanoic (C) -0.0 +0.3 -0.8 -0.3 -0.1
phage Ra3_0.1 -0.3 -0.2 -0.1 -0.0 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.0 -0.3 +0.1 -0.1
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +0.1 +0.1 -0.5 -0.1 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.1 -0.1 -0.0 -0.6
phage Ra1_0.1 -0.4 -0.3 +0.2 -0.0 -0.0
rhizosphere rhizosphere sample 1; outgrowth in LB +0.0 -0.1 -0.4 +0.1 +0.1
phage Ra3_1 -0.4 -0.1 +0.1 +0.0 +0.2
carbon source Protocatechuic Acid (C) +0.1 +0.1 -0.3 -0.1 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.4 -0.0 -0.1 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.2 -0.3 +0.1 -0.3
carbon source Azelaic (C) -0.0 -0.1 +0.3 +0.1 -0.2
micoeukaryotes Dictyostellum sp.mixed culture-2 +0.2 +0.2 +0.0 -0.1 -0.3
rhizosphere rhizosphere sample 8; outgrowth in LB +0.4 +0.0 -0.3 -0.0 -0.0
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.5 -0.5 +0.1 -0.0
root root sample 5; outgrowth in LB -0.1 -0.1 -0.1 -0.0 +0.5
carbon source Sebacic (C) +0.1 +0.4 -0.1 +0.1 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.1 -0.2 +0.0 +0.3
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.4 +0.1 +0.2 -0.1 -0.3
root root sample 4; outgrowth in LB -0.1 +0.2 +0.2 +0.2 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 +0.2 +0.3 -0.1 +0.2
rhizosphere rhizosphere sample 2; outgrowth in LB +0.1 -0.0 +0.4 +0.0 +0.2
root root sample 6; outgrowth in LB +0.3 -0.0 +0.1 +0.0 +0.3
carbon source Sebacic (C) +0.1 -0.1 +0.1 +0.2 +0.4
nitrogen source nitrogen source nitrate 5mM +0.1 +0.1 -0.1 +0.2 +0.4
root root EcoFAB sample 1; outgrowth in LB +0.2 +0.2 -0.1 +0.2 +0.3
carbon source Octanoic (C) +0.3 +0.2 -0.0 -0.0 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.2 +0.0 +0.2 +0.2
carbon source 4-Hydroxybenzoic Acid (C) +0.1 +0.3 +0.4 +0.2 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.1 +0.3 +0.1 +0.3
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ABZR87_RS02890
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ABZR87_RS02895
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ABZR87_RS02905
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ABZR87_RS02910
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