Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS02865 and ABZR87_RS02870 are separated by 297 nucleotidesABZR87_RS02870 and ABZR87_RS02875 are separated by 99 nucleotidesABZR87_RS02875 and ABZR87_RS02880 overlap by 4 nucleotidesABZR87_RS02880 and ABZR87_RS02885 are separated by 112 nucleotides ABZR87_RS02865: ABZR87_RS02865 - 30S ribosomal protein S12, at 594,328 to 594,705 _RS02865 ABZR87_RS02870: ABZR87_RS02870 - MFS transporter, at 595,003 to 596,256 _RS02870 ABZR87_RS02875: ABZR87_RS02875 - LysR family transcriptional regulator, at 596,356 to 597,276 _RS02875 ABZR87_RS02880: ABZR87_RS02880 - DNA helicase RecQ, at 597,273 to 599,186 _RS02880 ABZR87_RS02885: ABZR87_RS02885 - class I SAM-dependent methyltransferase, at 599,299 to 599,889 _RS02885
Group Condition ABZR87_RS02865 ABZR87_RS02870 ABZR87_RS02875 ABZR87_RS02880 ABZR87_RS02885
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.2 -0.0 +0.2 -0.8
carbon source Pimelic (C) N.D. -0.1 -0.1 -0.2 -0.4
carbon source butyrate (C) N.D. -0.1 -0.1 -0.0 -0.3
root root sample 4; outgrowth in LB N.D. +0.1 -0.3 -0.0 -0.4
rhizosphere rhizosphere sample 8; outgrowth in LB N.D. -0.3 -0.1 -0.2 +0.1
carbon source Trans-2-methyl-2-butenoic (C) N.D. -0.1 -0.2 +0.1 -0.2
no_plant_soil no_plant_soil sample 1; outgrowth in LB N.D. +0.2 -0.1 -0.2 -0.2
root root sample 6; outgrowth in LB N.D. -0.1 +0.1 +0.3 -0.6
rhizosphere rhizosphere sample 3; outgrowth in LB N.D. +0.4 -0.0 -0.3 -0.3
carbon source Sebacic (C) N.D. +0.1 -0.0 +0.2 -0.5
carbon source 4-Hydroxybenzoic Acid (C) N.D. +0.3 +0.0 -0.2 -0.3
carbon source Lauric (C) N.D. +0.0 -0.2 -0.2 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.4 +0.2 +0.1 +0.1
carbon source Dodecandioic (C) N.D. +0.3 +0.0 +0.0 -0.3
carbon source Azelaic (C) N.D. -0.2 -0.1 -0.0 +0.4
rhizosphere rhizosphere sample 9; outgrowth in LB N.D. -0.1 -0.1 -0.1 +0.4
rhizosphere rhizosphere sample 7; outgrowth in LB N.D. +0.1 +0.0 -0.3 +0.3
carbon source Octanoic (C) N.D. +0.1 -0.3 +0.1 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.1 -0.3 +0.3 -0.0
root root EcoFAB sample 2; outgrowth in LB N.D. +0.5 -0.2 -0.2 +0.2
soil soil EcoFAB sample 1; outgrowth in LB N.D. -0.6 +0.2 +0.2 +0.4
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB N.D. +0.1 -0.2 +0.3 +0.1
carbon source Valeric (C) N.D. -0.1 +0.1 +0.1 +0.4
root root EcoFAB sample 1; outgrowth in LB N.D. +0.3 +0.1 +0.1 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.1 +0.1 +0.3 +0.3
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB N.D. +0.1 -0.0 +0.2 +0.4
carbon source L-Glutamic (C) N.D. +0.1 +0.6 +0.1 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.1 +0.4 +0.2 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.5 +0.1 -0.0 +0.5
root root sample 5; outgrowth in LB N.D. +0.1 +0.1 +0.3 +1.0
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