Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS02660 and ABZR87_RS02665 are separated by 25 nucleotidesABZR87_RS02665 and ABZR87_RS02670 are separated by 108 nucleotidesABZR87_RS02670 and ABZR87_RS02675 are separated by 7 nucleotidesABZR87_RS02675 and ABZR87_RS02680 are separated by 112 nucleotides ABZR87_RS02660: ABZR87_RS02660 - RNA polymerase sigma factor, at 565,353 to 565,934 _RS02660 ABZR87_RS02665: ABZR87_RS02665 - ATP-binding protein, at 565,960 to 566,388 _RS02665 ABZR87_RS02670: ABZR87_RS02670 - c-type cytochrome biogenesis protein CcsB, at 566,497 to 567,684 _RS02670 ABZR87_RS02675: ABZR87_RS02675 - cytochrome c biogenesis protein ResB, at 567,692 to 569,899 _RS02675 ABZR87_RS02680: ABZR87_RS02680 - c-type cytochrome, at 570,012 to 570,671 _RS02680
Group Condition ABZR87_RS02660 ABZR87_RS02665 ABZR87_RS02670 ABZR87_RS02675 ABZR87_RS02680
carbon source Sebacic (C) -0.5 -0.6 N.D. N.D. -4.9
carbon source Octanoic (C) -0.5 -0.5 N.D. N.D. -4.5
carbon source Heptanoic (C) -0.3 -0.0 N.D. N.D. -4.0
carbon source Heptanoic (C) -0.5 -0.0 N.D. N.D. -3.6
carbon source Dodecandioic (C) -0.7 -0.0 N.D. N.D. -2.7
carbon source Octanoic (C) +0.6 +0.4 N.D. N.D. -4.2
carbon source Dodecandioic (C) -0.5 +0.1 N.D. N.D. -2.6
carbon source Sebacic (C) -0.2 -0.3 N.D. N.D. -2.4
soil soil EcoFAB sample 1; outgrowth in LB -0.6 -1.7 N.D. N.D. -0.6
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -1.4 -0.8 N.D. N.D. -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.6 -0.2 N.D. N.D. -1.7
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.2 -0.2 N.D. N.D. -2.4
no_plant_soil no_plant_soil sample 1; outgrowth in LB -0.3 -0.1 N.D. N.D. -1.9
root root EcoFAB sample 2; outgrowth in LB -0.3 +0.1 N.D. N.D. -2.1
carbon source Azelaic (C) +0.1 -0.6 N.D. N.D. -1.6
no_plant_soil no_plant_soil sample 3; outgrowth in LB +0.2 -0.5 N.D. N.D. -1.7
root root sample 6; outgrowth in LB -0.4 -0.3 N.D. N.D. -1.3
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.3 -0.3 N.D. N.D. -1.4
carbon source adipate (C) -0.2 -0.2 N.D. N.D. -1.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 +0.3 N.D. N.D. -2.0
carbon source Lauric (C) -0.6 -0.1 N.D. N.D. -1.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.8 +0.1 N.D. N.D. -1.2
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 +0.3 N.D. N.D. -1.5
soil soil EcoFAB sample 2; outgrowth in LB -0.9 +0.1 N.D. N.D. -0.9
rhizosphere rhizosphere sample 3; outgrowth in LB -0.2 +0.3 N.D. N.D. -1.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.4 N.D. N.D. -1.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.6 N.D. N.D. -1.3
root root sample 5; outgrowth in LB +0.4 +0.3 N.D. N.D. -1.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 +0.3 N.D. N.D. -1.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.1 -0.0 N.D. N.D. -1.5
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