Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 129 experiments or choose conditions or try the comparative fitness browser

500 ntABZR87_RS02615 and ABZR87_RS02620 are separated by 10 nucleotidesABZR87_RS02620 and ABZR87_RS02625 are separated by 452 nucleotidesABZR87_RS02625 and ABZR87_RS02630 are separated by 72 nucleotidesABZR87_RS02630 and ABZR87_RS02635 are separated by 138 nucleotides ABZR87_RS02615: ABZR87_RS02615 - PilN domain-containing protein, at 555,971 to 556,603 _RS02615 ABZR87_RS02620: ABZR87_RS02620 - type IV pilus biogenesis protein PilM, at 556,614 to 557,684 _RS02620 ABZR87_RS02625: ABZR87_RS02625 - penicillin-binding protein 1A, at 558,137 to 560,551 _RS02625 ABZR87_RS02630: ABZR87_RS02630 - iron donor protein CyaY, at 560,624 to 560,968 _RS02630 ABZR87_RS02635: ABZR87_RS02635 - lipoprotein, at 561,107 to 561,340 _RS02635
Group Condition ABZR87_RS02615 ABZR87_RS02620 ABZR87_RS02625 ABZR87_RS02630 ABZR87_RS02635
carbon source Heptanoic (C) -0.3 +0.2 N.D. -3.9 N.D.
carbon source Heptanoic (C) -0.3 +0.2 N.D. -3.6 N.D.
carbon source Octanoic (C) +0.3 -0.5 N.D. -3.2 N.D.
carbon source Octanoic (C) -0.2 -0.2 N.D. -2.5 N.D.
root root sample 5; outgrowth in LB -1.1 -0.5 N.D. -1.1 N.D.
no_plant_soil no_plant_soil sample 1; outgrowth in LB -0.6 -0.4 N.D. -1.4 N.D.
carbon source Sebacic (C) -0.3 +0.0 N.D. -2.1 N.D.
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) -0.5 -0.8 N.D. -1.2 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.6 -0.3 N.D. -1.4 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.3 N.D. -2.1 N.D.
carbon source Azelaic (C) -0.2 -0.0 N.D. -1.7 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.5 -0.6 N.D. -0.6 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.4 N.D. -1.1 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.3 N.D. -1.2 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 -0.4 N.D. -1.2 N.D.
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.2 +0.2 N.D. -1.7 N.D.
root root EcoFAB sample 1; outgrowth in LB +0.1 +0.4 N.D. -1.2 N.D.
soil soil EcoFAB sample 1; outgrowth in LB +1.3 +1.1 N.D. -2.7 N.D.
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB +0.5 +0.6 N.D. -1.4 N.D.
root root EcoFAB sample 2; outgrowth in LB +0.2 +0.7 N.D. -1.0 N.D.
rhizosphere rhizosphere sample 3; outgrowth in LB +0.4 +0.8 N.D. -0.7 N.D.
soil soil EcoFAB sample 2; outgrowth in LB +1.3 +1.7 N.D. -2.1 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +1.3 +1.0 N.D. -1.3 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +1.2 +1.2 N.D. -1.3 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +2.0 +1.8 N.D. -2.3 N.D.
carbon source Lauric (C) -0.1 +0.1 N.D. +1.6 N.D.
phage Ra1_0.01 +2.3 +2.2 N.D. -0.6 N.D.
phage Ra3_0.1 +2.5 +2.4 N.D. -1.0 N.D.
phage Ra3_1 +6.2 +6.1 N.D. +0.5 N.D.
phage Ra1_0.1 +6.4 +6.3 N.D. +0.5 N.D.
remove
ABZR87_RS02615
plot		 remove
ABZR87_RS02620
plot		 remove
ABZR87_RS02625		 remove
ABZR87_RS02630
plot		 remove
ABZR87_RS02635
plot