Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS02600 and ABZR87_RS02605 are separated by 2 nucleotidesABZR87_RS02605 and ABZR87_RS02610 overlap by 4 nucleotidesABZR87_RS02610 and ABZR87_RS02615 are separated by 2 nucleotidesABZR87_RS02615 and ABZR87_RS02620 are separated by 10 nucleotides ABZR87_RS02600: ABZR87_RS02600 - temperature dependent type IV pilus secretin PilQ, at 552,608 to 554,764 _RS02600 ABZR87_RS02605: ABZR87_RS02605 - pilus assembly protein PilP, at 554,767 to 555,312 _RS02605 ABZR87_RS02610: ABZR87_RS02610 - type 4a pilus biogenesis protein PilO, at 555,309 to 555,968 _RS02610 ABZR87_RS02615: ABZR87_RS02615 - PilN domain-containing protein, at 555,971 to 556,603 _RS02615 ABZR87_RS02620: ABZR87_RS02620 - type IV pilus biogenesis protein PilM, at 556,614 to 557,684 _RS02620
Group Condition ABZR87_RS02600 ABZR87_RS02605 ABZR87_RS02610 ABZR87_RS02615 ABZR87_RS02620
root root sample 5; outgrowth in LB -0.8 -1.4 -1.4 -1.1 -0.5
root root sample 6; outgrowth in LB -0.7 -0.7 -1.3 -0.1 -0.2
no_plant_soil no_plant_soil sample 1; outgrowth in LB -0.4 -0.8 -0.5 -0.6 -0.4
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) -0.5 -0.5 -0.4 -0.5 -0.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 -0.3 -0.4 -0.5 -0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.3 +0.1 -0.6 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -0.1 -0.5 -0.1 -0.3
rhizosphere rhizosphere sample 4; outgrowth in LB -0.2 -0.5 -0.4 -0.1 -0.1
rhizosphere rhizosphere sample 6; outgrowth in LB -0.3 -0.1 -0.3 -0.3 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -0.2 -0.1 -0.2 -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 -0.4 -0.3 -0.1 +0.1
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.4 -0.4 +0.2 -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 -0.5 -0.1 -0.0 -0.7
root root sample 4; outgrowth in LB -0.2 -0.4 -0.4 +0.1 +0.1
carbon source Sebacic (C) +0.1 +0.1 -0.6 -0.2 +0.1
rhizosphere rhizosphere sample 9; outgrowth in LB +0.4 +0.1 +0.1 +0.0 +0.6
root root EcoFAB sample 2; outgrowth in LB +0.2 +0.3 +0.4 +0.2 +0.7
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.5 +0.5 +0.4 +0.2 +0.2
rhizosphere rhizosphere sample 3; outgrowth in LB +0.2 +0.3 +0.2 +0.4 +0.8
phage Ra3_0.01 +0.4 +0.2 +0.4 +0.5 +0.3
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB +0.9 +0.5 +0.6 +0.5 +0.6
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +1.4 +1.3 +1.4 +1.2 +1.2
soil soil EcoFAB sample 1; outgrowth in LB +1.5 +1.2 +1.5 +1.3 +1.1
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +1.5 +1.6 +1.6 +1.3 +1.0
soil soil EcoFAB sample 2; outgrowth in LB +1.6 +1.6 +1.5 +1.3 +1.7
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +2.0 +1.8 +2.3 +2.0 +1.8
phage Ra1_0.01 +2.1 +2.0 +2.1 +2.3 +2.2
phage Ra3_0.1 +2.4 +2.4 +2.5 +2.5 +2.4
phage Ra3_1 +6.2 +6.1 +6.3 +6.2 +6.1
phage Ra1_0.1 +6.3 +6.1 +6.2 +6.4 +6.3
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ABZR87_RS02600
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ABZR87_RS02605
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ABZR87_RS02615
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