Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS02390 and ABZR87_RS02395 are separated by 12 nucleotidesABZR87_RS02395 and ABZR87_RS02400 are separated by 19 nucleotidesABZR87_RS02400 and ABZR87_RS02405 are separated by 420 nucleotidesABZR87_RS02405 and ABZR87_RS02410 are separated by 332 nucleotides ABZR87_RS02390: ABZR87_RS02390 - large conductance mechanosensitive channel protein MscL, at 510,229 to 510,657 _RS02390 ABZR87_RS02395: ABZR87_RS02395 - Nif3-like dinuclear metal center hexameric protein, at 510,670 to 511,416 _RS02395 ABZR87_RS02400: ABZR87_RS02400 - Do family serine endopeptidase, at 511,436 to 512,650 _RS02400 ABZR87_RS02405: ABZR87_RS02405 - porin, at 513,071 to 514,177 _RS02405 ABZR87_RS02410: ABZR87_RS02410 - extracellular solute-binding protein, at 514,510 to 515,652 _RS02410
Group Condition ABZR87_RS02390 ABZR87_RS02395 ABZR87_RS02400 ABZR87_RS02405 ABZR87_RS02410
carbon source Protocatechuic Acid (C) -0.2 +0.2 -2.6 N.D. +0.0
carbon source Protocatechuic Acid (C) -0.3 +0.1 -1.8 N.D. +0.1
carbon source Dodecandioic (C) -0.6 +0.1 -1.1 N.D. +0.0
phage Ra1_0.1 -0.1 -0.1 -1.3 N.D. -0.0
carbon source Sebacic (C) -0.1 +0.0 -1.3 N.D. -0.0
soil soil EcoFAB sample 1; outgrowth in LB -1.2 +0.1 -0.4 N.D. +0.1
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.1 +0.1 -1.6 N.D. +0.2
phage Ra3_1 +0.0 -0.0 -1.3 N.D. +0.0
carbon source Dodecandioic (C) -0.7 +0.1 -1.0 N.D. +0.3
carbon source Pimelic (C) -0.1 -0.1 -0.9 N.D. +0.1
carbon source Lauric (C) +0.1 -0.0 -1.0 N.D. +0.1
carbon source Azelaic (C) -0.2 +0.2 -0.7 N.D. -0.1
rhizosphere rhizosphere sample 2; outgrowth in LB -0.3 +0.4 -0.6 N.D. +0.2
micoeukaryotes C.elegans, mixed culture-1 +0.1 -0.2 +1.1 N.D. -0.1
carbon source Octanoic (C) -0.1 -0.2 +1.1 N.D. +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.1 +1.0 N.D. -0.1
micoeukaryotes Dictyostellum sp.mixed culture-1 +0.0 +0.1 +1.1 N.D. -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.2 +0.8 N.D. +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 +0.2 +0.9 N.D. +0.1
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.0 +0.2 +0.2 N.D. +0.8
micoeukaryotes Dictyostellum sp.mixed culture-2 +0.0 +0.0 +1.3 N.D. -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 -0.0 +1.2 N.D. +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.1 +1.0 N.D. -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.1 +1.0 N.D. +0.2
micoeukaryotes Acanthamoeba sp., muxed culture-2 +0.0 -0.1 +1.3 N.D. +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.1 +1.0 N.D. +0.2
micoeukaryotes C.elegans, mixed culture-2 +0.1 +0.0 +1.5 N.D. +0.1
micoeukaryotes Acanthamoeba sp., muxed culture-1 -0.0 +0.0 +2.1 N.D. -0.0
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 +0.3 +1.1 N.D. +0.2
carbon source 4-Hydroxybenzoic Acid (C) +0.5 +0.1 +1.4 N.D. +0.1
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