Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS02380 and ABZR87_RS02385 overlap by 1 nucleotidesABZR87_RS02385 and ABZR87_RS02390 are separated by 245 nucleotidesABZR87_RS02390 and ABZR87_RS02395 are separated by 12 nucleotidesABZR87_RS02395 and ABZR87_RS02400 are separated by 19 nucleotides ABZR87_RS02380: ABZR87_RS02380 - cytochrome bc complex cytochrome b subunit, at 507,972 to 509,375 _RS02380 ABZR87_RS02385: ABZR87_RS02385 - ubiquinol-cytochrome c reductase iron-sulfur subunit, at 509,375 to 509,983 _RS02385 ABZR87_RS02390: ABZR87_RS02390 - large conductance mechanosensitive channel protein MscL, at 510,229 to 510,657 _RS02390 ABZR87_RS02395: ABZR87_RS02395 - Nif3-like dinuclear metal center hexameric protein, at 510,670 to 511,416 _RS02395 ABZR87_RS02400: ABZR87_RS02400 - Do family serine endopeptidase, at 511,436 to 512,650 _RS02400
Group Condition ABZR87_RS02380 ABZR87_RS02385 ABZR87_RS02390 ABZR87_RS02395 ABZR87_RS02400
no_plant_soil no_plant_soil sample 1; outgrowth in LB -5.1 -5.5 -0.1 +0.0 +0.6
no_plant_soil no_plant_soil sample 3; outgrowth in LB -4.9 -4.7 +0.1 +0.1 -0.4
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -4.1 -3.5 -0.1 +0.1 -1.6
carbon source Sebacic (C) -4.4 -4.6 +0.3 -0.0 -0.3
carbon source Heptanoic (C) -4.0 -4.5 +0.1 -0.0 +0.2
carbon source Dodecandioic (C) -3.5 -2.5 -0.6 +0.1 -1.1
carbon source Octanoic (C) -4.6 -3.4 -0.1 +0.4 +0.1
soil soil EcoFAB sample 1; outgrowth in LB -2.2 -3.8 -1.2 +0.1 -0.4
soil soil EcoFAB sample 2; outgrowth in LB -2.9 -3.9 -0.3 -0.0 -0.3
no_plant_soil no_plant_soil sample 2; outgrowth in LB -4.1 -3.3 +0.1 +0.1 -0.3
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -2.4 -4.0 -0.2 +0.0 -0.8
carbon source Octanoic (C) -4.5 -3.8 -0.1 -0.2 +1.1
carbon source Heptanoic (C) -4.0 -3.4 -0.1 -0.1 +0.4
carbon source Sebacic (C) -3.2 -2.5 -0.1 +0.0 -1.3
carbon source Dodecandioic (C) -2.6 -2.6 -0.7 +0.1 -1.0
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -3.0 -3.3 -0.1 +0.1 +0.0
root root EcoFAB sample 1; outgrowth in LB -2.2 -2.7 -0.3 -0.0 -0.7
carbon source Azelaic (C) -3.9 -1.0 -0.2 +0.2 -0.7
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -2.6 -3.3 +0.0 +0.2 +0.2
carbon source Protocatechuic Acid (C) -1.3 -1.5 -0.2 +0.2 -2.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.7 -3.5 +0.1 +0.1 +1.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.7 -3.2 +0.3 +0.1 +0.5
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -2.5 -2.3 -0.1 -0.2 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.2 -3.4 +0.1 +0.2 +0.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.9 -2.1 +0.0 +0.2 +0.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.6 -2.2 +0.0 +0.1 +0.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.6 -2.4 +0.1 +0.1 +1.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.3 -2.4 +0.0 -0.0 +1.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.3 -2.4 +0.2 +0.1 +1.0
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.8 -1.5 +0.5 +0.3 +1.1
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ABZR87_RS02380
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ABZR87_RS02385
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ABZR87_RS02395
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ABZR87_RS02400
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