Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 129 experiments or choose conditions or try the comparative fitness browser

500 ntABZR87_RS02300 and ABZR87_RS02305 are separated by 9 nucleotidesABZR87_RS02305 and ABZR87_RS02310 overlap by 4 nucleotidesABZR87_RS02310 and ABZR87_RS02315 are separated by 124 nucleotidesABZR87_RS02315 and ABZR87_RS02320 are separated by 51 nucleotides ABZR87_RS02300: ABZR87_RS02300 - aminoacyl-tRNA deacylase, at 493,098 to 493,586 _RS02300 ABZR87_RS02305: ABZR87_RS02305 - CDGSH iron-sulfur domain-containing protein, at 493,596 to 493,820 _RS02305 ABZR87_RS02310: ABZR87_RS02310 - energy-dependent translational throttle protein EttA, at 493,817 to 495,484 _RS02310 ABZR87_RS02315: ABZR87_RS02315 - winged helix DNA-binding domain-containing protein, at 495,609 to 496,739 _RS02315 ABZR87_RS02320: ABZR87_RS02320 - cytochrome o ubiquinol oxidase subunit IV, at 496,791 to 497,159 _RS02320
Group Condition ABZR87_RS02300 ABZR87_RS02305 ABZR87_RS02310 ABZR87_RS02315 ABZR87_RS02320
carbon source Octanoic (C) +0.4 -2.5 -0.4 +0.1 -0.9
rhizosphere rhizosphere sample 2; outgrowth in LB -0.1 -1.5 -0.1 +0.1 -1.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -2.3 +0.1 +0.5 -0.9
carbon source Sebacic (C) -0.1 -1.6 -0.4 -0.3 -0.3
soil soil EcoFAB sample 1; outgrowth in LB +0.0 -0.2 +0.1 +0.1 -2.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -1.0 +0.2 +0.1 -2.3
carbon source Octanoic (C) +0.2 -1.5 -0.4 +0.8 -1.3
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.3 -0.7 +0.0 -0.3 -0.5
nitrogen source nitrogen source nitrite 0.5mM -0.2 -0.6 +0.2 -0.2 -0.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 +0.3 +0.0 -0.0 -1.5
rhizosphere rhizosphere sample 9; outgrowth in LB -0.1 -0.8 +0.2 -0.3 -0.6
soil soil sample 2; outgrowth in LB -0.0 +0.4 -0.0 -0.1 -1.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 -1.4 +0.2 -0.3 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.7 +0.1 +0.2 -0.7
carbon source 4-Hydroxybenzoic Acid (C) +0.2 +1.5 -0.1 +0.1 -2.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.4 +0.2 +0.1 -1.2
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.1 +1.3 -0.2 +0.2 -1.7
carbon source Dodecandioic (C) -0.0 -0.7 -0.1 +0.3 +0.6
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.0 +0.7 -0.1 +0.1 -0.8
nitrogen source nitrogen source nitrate 5mM +0.1 -0.8 -0.0 +0.1 +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +1.1 +0.2 -0.6 -0.4
nitrogen source nitrogen source nitrate 20mM -0.1 -0.7 +0.1 +0.5 +0.8
rhizosphere rhizosphere sample 8; outgrowth in LB +0.0 +1.0 +0.1 -0.1 -0.5
rhizosphere rhizosphere sample 3; outgrowth in LB +0.1 +1.2 -0.0 +0.3 -0.9
root root sample 6; outgrowth in LB +0.3 -0.3 +0.3 +0.6 +0.1
rhizosphere rhizosphere sample 5; outgrowth in LB -0.1 +1.0 +0.2 +0.2 -0.3
root root sample 5; outgrowth in LB +0.1 +0.7 +0.3 -0.5 +0.4
carbon source Dodecandioic (C) +0.3 -0.3 -0.2 +0.1 +1.4
carbon source Protocatechuic Acid (C) +0.0 +0.4 -0.3 +0.0 +1.3
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 +2.5 +0.2 +1.3 -1.9
remove
ABZR87_RS02300
plot		 remove
ABZR87_RS02305
plot		 remove
ABZR87_RS02310		 remove
ABZR87_RS02315
plot		 remove
ABZR87_RS02320
plot