Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS02095 and ABZR87_RS02100 are separated by 83 nucleotidesABZR87_RS02100 and ABZR87_RS02105 are separated by 4 nucleotidesABZR87_RS02105 and ABZR87_RS02110 are separated by 204 nucleotidesABZR87_RS02110 and ABZR87_RS02115 are separated by 16 nucleotides ABZR87_RS02095: ABZR87_RS02095 - enoyl-CoA hydratase, at 451,652 to 452,428 _RS02095 ABZR87_RS02100: ABZR87_RS02100 - 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase PaaG, at 452,512 to 453,300 _RS02100 ABZR87_RS02105: ABZR87_RS02105 - hydroxyphenylacetyl-CoA thioesterase PaaI, at 453,305 to 453,772 _RS02105 ABZR87_RS02110: ABZR87_RS02110 - phenylacetate--CoA ligase PaaK, at 453,977 to 455,281 _RS02110 ABZR87_RS02115: ABZR87_RS02115 - murein transglycosylase A, at 455,298 to 456,452 _RS02115
Group Condition ABZR87_RS02095 ABZR87_RS02100 ABZR87_RS02105 ABZR87_RS02110 ABZR87_RS02115
carbon source Lauric (C) +0.0 -0.2 +0.0 +0.0 -5.7
carbon source Sebacic (C) -0.1 -2.9 -0.1 -0.1 -0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 +0.1 -0.3 -0.3 -0.6
rhizosphere rhizosphere sample 1; outgrowth in LB -0.1 -0.6 -0.0 +0.1 -0.4
root root sample 5; outgrowth in LB +0.2 -0.8 -0.3 +0.0 +0.1
soil soil EcoFAB sample 1; outgrowth in LB +0.2 -1.0 +0.1 -0.1 +0.1
phage Ra3_0.01 +0.1 -0.8 -0.0 -0.0 +0.1
carbon source Heptanoic (C) -0.1 -0.3 +0.2 +0.2 -0.5
carbon source butyrate (C) +0.1 -0.8 -0.1 -0.1 +0.5
soil soil sample 9; outgrowth in LB -0.0 -0.7 -0.0 +0.1 +0.2
carbon source Octanoic (C) -0.0 +0.3 +0.1 +0.1 -0.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -0.4 +0.4 +0.3 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -0.0 -0.2 +0.1 -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 +0.5 -0.0 -0.1 -0.5
carbon source Heptanoic (C) -0.2 +0.1 +0.2 +0.2 -0.3
rhizosphere rhizosphere sample 3; outgrowth in LB -0.4 +0.4 -0.2 +0.1 +0.1
nitrogen source nitrogen source nitrite 0.5mM -0.1 -0.4 -0.3 +0.2 +0.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.3 +0.2 +0.1 -0.5
root root sample 4; outgrowth in LB +0.2 -0.5 -0.0 +0.1 +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 +0.3 -0.1 +0.3 -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 +0.6 +0.0 +0.0 -0.5
nitrogen source nitrogen source nitrate 20mM -0.0 -0.2 -0.0 +0.0 +0.8
carbon source Azelaic (C) -0.3 +0.2 +0.4 -0.0 +0.3
nitrogen source nitrogen source nitrite 0.5mM +0.2 -0.3 -0.1 +0.0 +0.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.7 -0.2 +0.3 -0.1
nitrogen source nitrogen source Ammonium chloride 20mM +0.3 -0.4 +0.1 +0.1 +0.6
nitrogen source nitrogen source nitrate 5mM -0.2 +0.0 +0.2 +0.3 +0.6
nitrogen source nitrogen source nitrate 20mM +0.1 +0.1 -0.1 +0.1 +0.7
carbon source 4-Hydroxybenzoic Acid (C) +0.1 -0.1 +0.1 +0.1 +0.8
root root sample 6; outgrowth in LB +0.4 -0.0 +0.0 +0.3 +0.4
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