Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS02045 and ABZR87_RS02050 are separated by 54 nucleotidesABZR87_RS02050 and ABZR87_RS02055 are separated by 148 nucleotidesABZR87_RS02055 and ABZR87_RS02060 are separated by 47 nucleotidesABZR87_RS02060 and ABZR87_RS02065 are separated by 262 nucleotides ABZR87_RS02045: ABZR87_RS02045 - 1-phosphofructokinase, at 438,968 to 439,924 _RS02045 ABZR87_RS02050: ABZR87_RS02050 - fructose-specific PTS transporter subunit EIIC, at 439,979 to 441,694 _RS02050 ABZR87_RS02055: ABZR87_RS02055 - ABC transporter substrate-binding protein, at 441,843 to 443,000 _RS02055 ABZR87_RS02060: ABZR87_RS02060 - acetylornithine deacetylase, at 443,048 to 444,250 _RS02060 ABZR87_RS02065: ABZR87_RS02065 - M20 aminoacylase family protein, at 444,513 to 445,700 _RS02065
Group Condition ABZR87_RS02045 ABZR87_RS02050 ABZR87_RS02055 ABZR87_RS02060 ABZR87_RS02065
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.8 -0.4 +0.1 +0.0 -0.3
root root sample 6; outgrowth in LB -0.7 -0.2 -0.0 -0.2 -0.0
soil soil EcoFAB sample 2; outgrowth in LB -0.7 -0.4 +0.1 -0.1 +0.0
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.9 -0.5 +0.0 +0.3 +0.0
soil soil EcoFAB sample 1; outgrowth in LB -0.6 -0.2 +0.2 -0.0 -0.1
carbon source Octanoic (C) -1.7 +0.2 +0.1 +0.1 +0.6
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.7 -0.2 +0.2 +0.4 -0.3
root root EcoFAB sample 2; outgrowth in LB -0.9 +0.1 +0.2 +0.2 -0.1
rhizosphere rhizosphere sample 9; outgrowth in LB -0.7 -0.0 +0.1 +0.1 +0.1
no_plant_soil no_plant_soil sample 1; outgrowth in LB +0.0 -0.6 +0.2 +0.0 -0.2
root root EcoFAB sample 1; outgrowth in LB -0.3 -0.4 +0.3 -0.0 +0.0
carbon source acetate (C) -0.4 -0.2 +0.2 -0.1 +0.2
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.4 -0.3 +0.3 +0.2 +0.0
rhizosphere rhizosphere sample 7; outgrowth in LB -0.2 -0.3 +0.2 +0.2 -0.0
soil soil sample 3; outgrowth in LB -0.5 -0.1 +0.2 +0.2 +0.1
carbon source Sebacic (C) -0.9 +0.1 +0.2 +0.2 +0.4
carbon source Sebacic (C) -0.5 +0.2 +0.1 -0.2 +0.3
no_plant_soil no_plant_soil sample 3; outgrowth in LB -0.4 -0.5 +0.3 +0.2 +0.2
carbon source Heptanoic (C) -0.4 +0.2 +0.2 -0.0 +0.3
root root sample 4; outgrowth in LB -0.1 +0.1 -0.1 +0.6 -0.1
carbon source Dodecandioic (C) -0.5 +0.1 +0.2 +0.0 +0.6
carbon source Heptanoic (C) -0.1 +0.3 +0.2 +0.1 +0.4
phage Ra3_1 +0.7 +0.1 -0.0 +0.0 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.1 +0.4 -0.1 +0.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.3 +0.1 +0.2 +0.4
phage Ra1_0.1 +1.0 -0.2 -0.2 +0.1 +0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.2 +0.4 +0.3 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.5 +0.1 +0.2 +0.6
carbon source Octanoic (C) +0.3 +0.2 +0.1 +0.4 +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.6 +0.4 -0.0 +0.4 +0.4
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ABZR87_RS02045
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ABZR87_RS02050
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ABZR87_RS02060
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ABZR87_RS02065
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