Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS02020 and ABZR87_RS02025 are separated by 151 nucleotidesABZR87_RS02025 and ABZR87_RS02030 are separated by 10 nucleotidesABZR87_RS02030 and ABZR87_RS02035 are separated by 82 nucleotidesABZR87_RS02035 and ABZR87_RS02040 are separated by 217 nucleotides ABZR87_RS02020: ABZR87_RS02020 - long-chain fatty acid--CoA ligase, at 430,061 to 431,770 _RS02020 ABZR87_RS02025: ABZR87_RS02025 - aminopeptidase, at 431,922 to 433,019 _RS02025 ABZR87_RS02030: ABZR87_RS02030 - molybdopterin oxidoreductase family protein, at 433,030 to 435,126 _RS02030 ABZR87_RS02035: ABZR87_RS02035 - substrate-binding domain-containing protein, at 435,209 to 436,204 _RS02035 ABZR87_RS02040: ABZR87_RS02040 - phosphoenolpyruvate--protein phosphotransferase, at 436,422 to 438,971 _RS02040
Group Condition ABZR87_RS02020 ABZR87_RS02025 ABZR87_RS02030 ABZR87_RS02035 ABZR87_RS02040
carbon source Sebacic (C) -4.6 +0.7 -0.1 -1.1 +0.1
no_plant_soil no_plant_soil sample 1; outgrowth in LB -0.2 +0.1 -0.1 -4.0 -0.3
carbon source Sebacic (C) -4.6 +1.4 -0.2 -1.7 +0.6
carbon source Octanoic (C) -4.7 +2.6 -0.2 -2.0 +0.3
carbon source Lauric (C) -5.0 +1.4 +0.2 -1.0 +0.5
carbon source Heptanoic (C) -5.3 +1.8 -0.1 -0.6 +0.5
carbon source Heptanoic (C) -4.4 +1.6 -0.1 -0.9 +0.4
carbon source Dodecandioic (C) -4.3 +1.6 +0.3 -0.8 +0.1
carbon source Dodecandioic (C) -3.6 +1.4 -0.0 -1.0 +0.2
carbon source Protocatechuic Acid (C) -1.5 -0.0 -0.1 -1.3 +0.2
carbon source Azelaic (C) -2.2 +0.2 +0.1 -0.7 +0.1
carbon source Pimelic (C) -1.2 +0.2 -0.0 -1.4 +0.2
carbon source Octanoic (C) -4.2 +2.6 -0.0 -0.9 +0.3
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.7 +0.1 -0.0 -1.1 -0.5
carbon source Pimelic (C) -1.3 +0.3 -0.1 -1.0 +0.1
carbon source propionate (C) -1.2 +0.1 -0.1 -0.9 +0.1
carbon source propionate (C) -1.4 +0.3 -0.1 -1.0 +0.2
carbon source Protocatechuic Acid (C) -1.6 +0.1 +0.0 -0.4 +0.1
no_plant_soil no_plant_soil sample 2; outgrowth in LB +0.1 -0.1 +0.1 -1.8 +0.0
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.1 +0.3 -0.3 -0.8 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.8 +0.3 -0.4 -0.3 -0.4
no_plant_soil no_plant_soil sample 3; outgrowth in LB -0.3 -0.1 +0.0 -0.8 -0.4
carbon source adipate (C) -0.8 +0.1 +0.1 -1.0 +0.1
carbon source adipate (C) -0.9 +0.1 +0.1 -0.8 +0.2
root root sample 6; outgrowth in LB -0.2 -0.1 +0.2 -0.7 -0.5
carbon source Valeric (C) -0.6 +0.2 +0.1 -0.9 +0.0
carbon source Hexanoic (C) -1.2 +0.2 +0.1 -0.4 +0.1
carbon source butyrate (C) -0.8 +0.1 +0.1 -0.6 +0.0
carbon source Hexanoic (C) -1.0 +0.3 +0.0 -0.4 +0.1
root root sample 5; outgrowth in LB +0.6 +0.1 +0.1 -0.8 -0.6
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