Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS01990 and ABZR87_RS01995 are separated by 380 nucleotidesABZR87_RS01995 and ABZR87_RS02000 are separated by 121 nucleotidesABZR87_RS02000 and ABZR87_RS02005 are separated by 87 nucleotidesABZR87_RS02005 and ABZR87_RS02010 are separated by 21 nucleotides ABZR87_RS01990: ABZR87_RS01990 - 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase, at 424,125 to 424,778 _RS01990 ABZR87_RS01995: ABZR87_RS01995 - porin, at 425,159 to 426,337 _RS01995 ABZR87_RS02000: ABZR87_RS02000 - tripartite tricarboxylate transporter substrate binding protein, at 426,459 to 427,484 _RS02000 ABZR87_RS02005: ABZR87_RS02005 - MFS transporter, at 427,572 to 428,888 _RS02005 ABZR87_RS02010: ABZR87_RS02010 - alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB, at 428,910 to 429,344 _RS02010
Group Condition ABZR87_RS01990 ABZR87_RS01995 ABZR87_RS02000 ABZR87_RS02005 ABZR87_RS02010
carbon source Sebacic (C) N.D. -0.3 +0.0 -0.2 -0.6
nitrogen source nitrogen source nitrite 0.5mM N.D. +0.2 -0.4 -0.1 -0.7
carbon source Octanoic (C) N.D. +0.2 -0.7 -0.0 -0.3
carbon source Octanoic (C) N.D. +0.1 +0.0 -0.4 -0.4
carbon source propionate (C) N.D. +0.0 +0.1 -0.1 -0.6
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB N.D. +0.2 -0.3 +0.1 -0.1
carbon source Dodecandioic (C) N.D. +0.5 -0.3 +0.0 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.0 +0.2 +0.3 -0.4
carbon source Dodecandioic (C) N.D. +0.5 +0.1 -0.0 -0.5
soil soil sample 6; outgrowth in LB N.D. +0.2 +0.1 +0.2 -0.3
carbon source Sebacic (C) N.D. -0.5 +0.7 -0.1 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.1 +0.3 -0.1 +0.2
carbon source adipate (C) N.D. -0.5 +0.1 +0.0 +0.6
rhizosphere rhizosphere sample 6; outgrowth in LB N.D. +0.3 -0.5 +0.3 +0.2
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. +0.2 -0.3 +0.2 +0.4
root root sample 6; outgrowth in LB N.D. +0.4 -0.1 +0.6 -0.3
carbon source Suberic (C) N.D. +0.5 +0.2 +0.1 -0.1
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB N.D. +0.4 +0.0 +0.2 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.3 +0.1 -0.0 +0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.0 +0.7 -0.0 +0.1
rhizosphere rhizosphere sample 5; outgrowth in LB N.D. +0.3 +0.2 +0.2 +0.1
soil soil sample 9; outgrowth in LB N.D. +0.1 +0.1 +0.1 +0.5
root root sample 4; outgrowth in LB N.D. +0.1 +0.2 +0.2 +0.4
soil soil EcoFAB sample 1; outgrowth in LB N.D. +0.2 -0.3 +0.1 +0.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.3 +0.4 +0.2 +0.1
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. +0.2 +0.3 +0.3 +0.3
rhizosphere rhizosphere sample 3; outgrowth in LB N.D. +0.4 +0.3 +0.4 +0.1
no_plant_soil no_plant_soil sample 3; outgrowth in LB N.D. +0.7 +0.2 +0.0 +0.3
root root sample 5; outgrowth in LB N.D. +0.3 +0.5 +0.4 +0.3
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.5 +0.6 -0.2 +1.0
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