Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS01975 and ABZR87_RS01980 are separated by 28 nucleotidesABZR87_RS01980 and ABZR87_RS01985 are separated by 9 nucleotidesABZR87_RS01985 and ABZR87_RS01990 are separated by 380 nucleotidesABZR87_RS01990 and ABZR87_RS01995 are separated by 380 nucleotides ABZR87_RS01975: ABZR87_RS01975 - cell division protein FtsL, at 421,974 to 422,318 _RS01975 ABZR87_RS01980: ABZR87_RS01980 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 422,347 to 423,306 _RS01980 ABZR87_RS01985: ABZR87_RS01985 - division/cell wall cluster transcriptional repressor MraZ, at 423,316 to 423,744 _RS01985 ABZR87_RS01990: ABZR87_RS01990 - 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase, at 424,125 to 424,778 _RS01990 ABZR87_RS01995: ABZR87_RS01995 - porin, at 425,159 to 426,337 _RS01995
Group Condition ABZR87_RS01975 ABZR87_RS01980 ABZR87_RS01985 ABZR87_RS01990 ABZR87_RS01995
carbon source Octanoic (C) N.D. -4.4 N.D. N.D. +0.2
phage Ra1_0.01 N.D. -3.6 N.D. N.D. -0.1
carbon source Octanoic (C) N.D. -3.6 N.D. N.D. +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -3.2 N.D. N.D. +0.0
phage Ra1_0.1 N.D. -2.7 N.D. N.D. +0.1
soil soil sample 8; outgrowth in LB N.D. -2.7 N.D. N.D. +0.0
soil soil sample 5; outgrowth in LB N.D. -2.8 N.D. N.D. +0.2
carbon source Heptanoic (C) N.D. -2.5 N.D. N.D. -0.0
soil soil EcoFAB sample 1; outgrowth in LB N.D. -2.7 N.D. N.D. +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -2.5 N.D. N.D. +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -2.6 N.D. N.D. +0.3
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -2.8 N.D. N.D. +0.5
carbon source Trans-2-methyl-2-butenoic (C) N.D. -1.9 N.D. N.D. -0.2
micoeukaryotes C.elegans, mixed culture-1 N.D. -2.0 N.D. N.D. +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.6 N.D. N.D. -0.2
soil soil sample 6; outgrowth in LB N.D. -2.0 N.D. N.D. +0.2
micoeukaryotes Dictyostellum sp.mixed culture-1 N.D. -1.9 N.D. N.D. +0.1
carbon source Heptanoic (C) N.D. -1.8 N.D. N.D. -0.0
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB N.D. -1.9 N.D. N.D. +0.2
carbon source D-Xylose (C) N.D. -1.7 N.D. N.D. -0.1
carbon source D-Xylose (C) N.D. -1.7 N.D. N.D. +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.7 N.D. N.D. +0.1
soil soil sample 9; outgrowth in LB N.D. -1.6 N.D. N.D. +0.1
rhizosphere rhizosphere sample 5; outgrowth in LB N.D. -1.8 N.D. N.D. +0.3
rhizosphere rhizosphere sample 6; outgrowth in LB N.D. -1.6 N.D. N.D. +0.3
soil soil sample 3; outgrowth in LB N.D. -1.6 N.D. N.D. +0.2
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB N.D. -1.5 N.D. N.D. +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.4 N.D. N.D. +0.3
no_plant_soil no_plant_soil sample 3; outgrowth in LB N.D. -1.5 N.D. N.D. +0.7
rhizosphere rhizosphere sample 3; outgrowth in LB N.D. +1.4 N.D. N.D. +0.4
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