Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS01885 and ABZR87_RS01890 are separated by 73 nucleotidesABZR87_RS01890 and ABZR87_RS01895 are separated by 251 nucleotidesABZR87_RS01895 and ABZR87_RS01900 are separated by 69 nucleotidesABZR87_RS01900 and ABZR87_RS01905 are separated by 49 nucleotides ABZR87_RS01885: ABZR87_RS01885 - bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ, at 398,056 to 399,285 _RS01885 ABZR87_RS01890: ABZR87_RS01890 - preprotein translocase subunit SecA, at 399,359 to 402,163 _RS01890 ABZR87_RS01895: ABZR87_RS01895 - M23 family metallopeptidase, at 402,415 to 403,377 _RS01895 ABZR87_RS01900: ABZR87_RS01900 - DciA family protein, at 403,447 to 403,968 _RS01900 ABZR87_RS01905: ABZR87_RS01905 - UDP-3-O-acyl-N-acetylglucosamine deacetylase, at 404,018 to 404,935 _RS01905
Group Condition ABZR87_RS01885 ABZR87_RS01890 ABZR87_RS01895 ABZR87_RS01900 ABZR87_RS01905
soil soil EcoFAB sample 1; outgrowth in LB -3.4 N.D. -0.0 N.D. N.D.
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -2.8 N.D. -0.6 N.D. N.D.
soil soil sample 5; outgrowth in LB -3.2 N.D. +0.0 N.D. N.D.
root root EcoFAB sample 2; outgrowth in LB -2.6 N.D. -0.6 N.D. N.D.
carbon source Octanoic (C) -2.4 N.D. -0.4 N.D. N.D.
carbon source Octanoic (C) -2.6 N.D. -0.2 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.4 N.D. +0.1 N.D. N.D.
soil soil sample 2; outgrowth in LB -2.6 N.D. +0.3 N.D. N.D.
no_plant_soil no_plant_soil sample 2; outgrowth in LB -2.4 N.D. +0.2 N.D. N.D.
carbon source Lauric (C) -2.4 N.D. +0.2 N.D. N.D.
soil soil sample 3; outgrowth in LB -2.0 N.D. -0.2 N.D. N.D.
soil soil sample 4; outgrowth in LB -1.9 N.D. -0.2 N.D. N.D.
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -2.0 N.D. -0.0 N.D. N.D.
no_plant_soil no_plant_soil sample 3; outgrowth in LB -2.1 N.D. -0.0 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.8 N.D. -0.3 N.D. N.D.
rhizosphere rhizosphere sample 6; outgrowth in LB -2.3 N.D. +0.3 N.D. N.D.
carbon source butyrate (C) -1.5 N.D. -0.3 N.D. N.D.
soil soil sample 6; outgrowth in LB -2.0 N.D. +0.2 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.5 N.D. -0.3 N.D. N.D.
root root EcoFAB sample 1; outgrowth in LB -1.9 N.D. +0.1 N.D. N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB -1.5 N.D. -0.2 N.D. N.D.
carbon source Sebacic (C) -1.5 N.D. -0.1 N.D. N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -2.0 N.D. +0.4 N.D. N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -2.0 N.D. +0.4 N.D. N.D.
carbon source Heptanoic (C) -1.5 N.D. +0.1 N.D. N.D.
no_plant_soil no_plant_soil sample 1; outgrowth in LB -1.6 N.D. +0.2 N.D. N.D.
soil soil sample 8; outgrowth in LB -1.6 N.D. +0.2 N.D. N.D.
rhizosphere rhizosphere sample 4; outgrowth in LB -1.6 N.D. +0.3 N.D. N.D.
soil soil sample 1; outgrowth in LB -1.4 N.D. +0.2 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.2 N.D. +0.8 N.D. N.D.
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ABZR87_RS01885
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ABZR87_RS01890
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ABZR87_RS01900
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