Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS01855 and ABZR87_RS01860 are separated by 13 nucleotidesABZR87_RS01860 and ABZR87_RS01865 are separated by 134 nucleotidesABZR87_RS01865 and ABZR87_RS01870 are separated by 8 nucleotidesABZR87_RS01870 and ABZR87_RS01875 overlap by 8 nucleotides ABZR87_RS01855: ABZR87_RS01855 - A24 family peptidase, at 394,109 to 394,990 _RS01855 ABZR87_RS01860: ABZR87_RS01860 - dephospho-CoA kinase, at 395,004 to 395,618 _RS01860 ABZR87_RS01865: ABZR87_RS01865 - cell division protein ZapD, at 395,753 to 396,511 _RS01865 ABZR87_RS01870: ABZR87_RS01870 - DNA gyrase inhibitor YacG, at 396,520 to 396,723 _RS01870 ABZR87_RS01875: ABZR87_RS01875 - NUDIX domain-containing protein, at 396,716 to 397,165 _RS01875
Group Condition ABZR87_RS01855 ABZR87_RS01860 ABZR87_RS01865 ABZR87_RS01870 ABZR87_RS01875
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -4.7 N.D. +0.1 +0.4 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -4.1 N.D. +0.4 -0.1 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -3.8 N.D. +0.5 -0.1 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -3.8 N.D. +0.3 +0.0 +0.0
no_plant_soil no_plant_soil sample 1; outgrowth in LB -3.3 N.D. -0.1 +0.1 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -3.9 N.D. +0.6 +0.4 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -3.9 N.D. +0.3 +0.3 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -3.6 N.D. +0.8 -0.1 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -4.1 N.D. +0.7 +0.3 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -3.5 N.D. +0.8 +0.3 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -4.3 N.D. +0.7 +1.0 +0.1
no_plant_soil no_plant_soil sample 3; outgrowth in LB -1.9 N.D. -0.2 -0.1 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -3.4 N.D. +0.4 +0.6 +0.4
root root EcoFAB sample 1; outgrowth in LB -2.0 N.D. -0.3 +0.2 +0.1
soil soil sample 6; outgrowth in LB -1.5 N.D. -0.0 -0.3 +0.0
soil soil sample 8; outgrowth in LB -1.2 N.D. -0.5 -0.0 +0.1
no_plant_soil no_plant_soil sample 2; outgrowth in LB -2.0 N.D. +0.1 +0.2 +0.1
carbon source Octanoic (C) -1.6 N.D. -0.1 -0.3 +0.6
root root sample 5; outgrowth in LB -1.4 N.D. -0.2 -0.0 +0.3
soil soil sample 3; outgrowth in LB -1.5 N.D. +0.0 +0.2 +0.2
carbon source Dodecandioic (C) -1.2 N.D. +0.4 -0.2 +0.0
root root sample 6; outgrowth in LB -1.4 N.D. -0.7 +0.9 +0.6
carbon source Octanoic (C) -1.3 N.D. +0.5 -0.4 +0.7
carbon source Dodecandioic (C) -0.9 N.D. +0.4 -0.1 +0.3
phage Ra1_0.01 +1.8 N.D. -0.0 -0.3 -0.1
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +1.8 N.D. -0.3 -0.0 +0.1
soil soil EcoFAB sample 2; outgrowth in LB +2.0 N.D. +0.0 -0.2 -0.1
phage Ra3_0.1 +2.0 N.D. +0.1 +0.0 -0.1
phage Ra3_1 +5.6 N.D. +0.0 -0.4 +0.1
phage Ra1_0.1 +5.8 N.D. -0.1 -0.2 -0.1
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ABZR87_RS01855
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ABZR87_RS01860
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ABZR87_RS01870
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ABZR87_RS01875
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