Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS01845 and ABZR87_RS01850 are separated by 44 nucleotidesABZR87_RS01850 and ABZR87_RS01855 overlap by 1 nucleotidesABZR87_RS01855 and ABZR87_RS01860 are separated by 13 nucleotidesABZR87_RS01860 and ABZR87_RS01865 are separated by 134 nucleotides ABZR87_RS01845: ABZR87_RS01845 - type IV-A pilus assembly ATPase PilB, at 391,072 to 392,799 _RS01845 ABZR87_RS01850: ABZR87_RS01850 - type II secretion system F family protein, at 392,844 to 394,109 _RS01850 ABZR87_RS01855: ABZR87_RS01855 - A24 family peptidase, at 394,109 to 394,990 _RS01855 ABZR87_RS01860: ABZR87_RS01860 - dephospho-CoA kinase, at 395,004 to 395,618 _RS01860 ABZR87_RS01865: ABZR87_RS01865 - cell division protein ZapD, at 395,753 to 396,511 _RS01865
Group Condition ABZR87_RS01845 ABZR87_RS01850 ABZR87_RS01855 ABZR87_RS01860 ABZR87_RS01865
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 -0.5 -4.7 N.D. +0.1
no_plant_soil no_plant_soil sample 1; outgrowth in LB -0.5 -0.6 -3.3 N.D. -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.7 -3.9 N.D. +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.6 -4.1 N.D. +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.6 -3.8 N.D. +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.8 -3.9 N.D. +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -0.2 -4.3 N.D. +0.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.6 -3.8 N.D. +0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -0.5 -3.4 N.D. +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.3 -4.1 N.D. +0.7
root root sample 5; outgrowth in LB -0.9 -1.1 -1.4 N.D. -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 -0.7 -3.5 N.D. +0.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.1 -3.6 N.D. +0.8
root root sample 6; outgrowth in LB -0.6 -0.4 -1.4 N.D. -0.7
carbon source Octanoic (C) -0.7 -0.6 -1.6 N.D. -0.1
no_plant_soil no_plant_soil sample 2; outgrowth in LB -0.4 -0.5 -2.0 N.D. +0.1
root root EcoFAB sample 1; outgrowth in LB -0.3 -0.1 -2.0 N.D. -0.3
soil soil sample 6; outgrowth in LB -0.5 -0.5 -1.5 N.D. -0.0
no_plant_soil no_plant_soil sample 3; outgrowth in LB -0.2 -0.2 -1.9 N.D. -0.2
carbon source 4-Hydroxybenzoic Acid (C) -1.0 -0.7 -0.5 N.D. +0.5
carbon source Dodecandioic (C) -0.5 -0.3 -1.2 N.D. +0.4
carbon source Octanoic (C) -0.3 -0.4 -1.3 N.D. +0.5
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +1.0 +0.9 +0.8 N.D. -0.2
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.8 +1.1 +0.9 N.D. -0.4
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +1.3 +1.5 +1.8 N.D. -0.3
soil soil EcoFAB sample 2; outgrowth in LB +1.5 +1.1 +2.0 N.D. +0.0
phage Ra1_0.01 +2.0 +1.9 +1.8 N.D. -0.0
phage Ra3_0.1 +2.3 +2.1 +2.0 N.D. +0.1
phage Ra3_1 +6.0 +5.7 +5.6 N.D. +0.0
phage Ra1_0.1 +6.1 +5.9 +5.8 N.D. -0.1
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