Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS01835 and ABZR87_RS01840 are separated by 171 nucleotidesABZR87_RS01840 and ABZR87_RS01845 are separated by 259 nucleotidesABZR87_RS01845 and ABZR87_RS01850 are separated by 44 nucleotidesABZR87_RS01850 and ABZR87_RS01855 overlap by 1 nucleotides ABZR87_RS01835: ABZR87_RS01835 - tRNA-Pro, at 389,290 to 389,366 _RS01835 ABZR87_RS01840: ABZR87_RS01840 - HlyC/CorC family transporter, at 389,538 to 390,812 _RS01840 ABZR87_RS01845: ABZR87_RS01845 - type IV-A pilus assembly ATPase PilB, at 391,072 to 392,799 _RS01845 ABZR87_RS01850: ABZR87_RS01850 - type II secretion system F family protein, at 392,844 to 394,109 _RS01850 ABZR87_RS01855: ABZR87_RS01855 - A24 family peptidase, at 394,109 to 394,990 _RS01855
Group Condition ABZR87_RS01835 ABZR87_RS01840 ABZR87_RS01845 ABZR87_RS01850 ABZR87_RS01855
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.4 -0.4 -0.5 -4.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.3 -0.2 -0.7 -3.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.0 -0.1 -0.6 -4.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.0 -0.2 -0.8 -3.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.1 -0.3 -0.2 -4.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.4 -0.1 -0.3 -4.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.2 -0.1 -0.6 -3.8
no_plant_soil no_plant_soil sample 1; outgrowth in LB N.D. -0.2 -0.5 -0.6 -3.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.0 -0.2 -0.6 -3.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.1 +0.0 -0.7 -3.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.1 -0.3 -0.5 -3.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.1 -0.2 -0.1 -3.6
root root sample 5; outgrowth in LB N.D. -0.1 -0.9 -1.1 -1.4
carbon source Octanoic (C) N.D. -0.5 -0.7 -0.6 -1.6
carbon source Sebacic (C) N.D. -1.1 -0.8 -0.9 -0.4
no_plant_soil no_plant_soil sample 2; outgrowth in LB N.D. +0.1 -0.4 -0.5 -2.0
root root sample 6; outgrowth in LB N.D. -0.3 -0.6 -0.4 -1.4
carbon source Dodecandioic (C) N.D. -0.7 -0.5 -0.3 -1.2
soil soil sample 6; outgrowth in LB N.D. -0.1 -0.5 -0.5 -1.5
root root EcoFAB sample 1; outgrowth in LB N.D. -0.1 -0.3 -0.1 -2.0
carbon source Dodecandioic (C) N.D. -0.8 -0.5 -0.2 -0.9
soil soil EcoFAB sample 1; outgrowth in LB N.D. -0.5 +1.1 +0.8 +0.3
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB N.D. -0.3 +1.0 +0.9 +0.8
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB N.D. -0.2 +0.8 +1.1 +0.9
soil soil EcoFAB sample 2; outgrowth in LB N.D. -0.5 +1.5 +1.1 +2.0
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB N.D. -0.5 +1.3 +1.5 +1.8
phage Ra1_0.01 N.D. +0.0 +2.0 +1.9 +1.8
phage Ra3_0.1 N.D. +0.1 +2.3 +2.1 +2.0
phage Ra3_1 N.D. +0.2 +6.0 +5.7 +5.6
phage Ra1_0.1 N.D. -0.1 +6.1 +5.9 +5.8
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ABZR87_RS01835
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ABZR87_RS01840
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ABZR87_RS01855
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