Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS01750 and ABZR87_RS01755 are separated by 39 nucleotidesABZR87_RS01755 and ABZR87_RS01760 overlap by 4 nucleotidesABZR87_RS01760 and ABZR87_RS01765 are separated by 45 nucleotidesABZR87_RS01765 and ABZR87_RS01770 are separated by 173 nucleotides ABZR87_RS01750: ABZR87_RS01750 - sigma-54 dependent transcriptional regulator, at 372,038 to 373,663 _RS01750 ABZR87_RS01755: ABZR87_RS01755 - ATP-binding protein, at 373,703 to 375,742 _RS01755 ABZR87_RS01760: ABZR87_RS01760 - PP0621 family protein, at 375,739 to 376,005 _RS01760 ABZR87_RS01765: ABZR87_RS01765 - cytochrome c biogenesis protein CcsA, at 376,051 to 376,962 _RS01765 ABZR87_RS01770: ABZR87_RS01770 - signal recognition particle protein, at 377,136 to 378,551 _RS01770
Group Condition ABZR87_RS01750 ABZR87_RS01755 ABZR87_RS01760 ABZR87_RS01765 ABZR87_RS01770
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.8 -0.7 -2.7 -1.7 N.D.
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.3 +0.4 -4.9 -1.4 N.D.
nitrogen source nitrogen source nitrite 0.5mM -0.2 +0.1 -5.0 +0.0 N.D.
root root EcoFAB sample 2; outgrowth in LB +0.1 +0.2 -2.3 -2.4 N.D.
carbon source Azelaic (C) +0.1 +0.2 -4.4 -0.1 N.D.
root root sample 6; outgrowth in LB +1.1 +0.0 -3.1 -1.0 N.D.
soil soil sample 5; outgrowth in LB -0.3 -0.4 -1.0 -1.2 N.D.
carbon source 4-Hydroxybenzoic Acid (C) -0.3 +0.5 -3.0 -0.0 N.D.
nitrogen source nitrogen source Ammonium chloride 20mM +0.1 +0.2 -2.8 -0.3 N.D.
carbon source Octanoic (C) -0.5 -0.3 +0.7 -2.7 N.D.
carbon source Lauric (C) -0.7 -0.6 -0.2 -1.4 N.D.
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) -0.9 -0.6 -1.2 +0.1 N.D.
root root EcoFAB sample 1; outgrowth in LB -0.2 -0.1 +0.6 -1.9 N.D.
root root sample 5; outgrowth in LB -0.4 -1.0 +1.1 -0.7 N.D.
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB +0.7 +0.5 -0.9 -1.1 N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB +1.1 +0.4 -0.5 -1.1 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.8 -0.6 +1.7 +0.0 N.D.
rhizosphere rhizosphere sample 9; outgrowth in LB +1.1 +0.5 +0.2 -1.2 N.D.
micoeukaryotes C.elegans, mixed culture-1 +0.9 +0.8 +1.0 -0.6 N.D.
soil soil EcoFAB sample 2; outgrowth in LB +1.4 +1.4 +0.7 -1.3 N.D.
soil soil EcoFAB sample 1; outgrowth in LB +1.5 +1.4 -0.0 -0.7 N.D.
rhizosphere rhizosphere sample 7; outgrowth in LB +1.2 +0.4 +1.3 -0.4 N.D.
micoeukaryotes C.elegans, mixed culture-2 +0.8 +0.9 +1.2 -0.1 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +2.8 +1.8 +0.3 -0.3 N.D.
phage Ra1_0.01 +2.2 +2.1 -0.5 +1.3 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +3.7 +2.7 -0.1 -0.5 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +4.2 +2.6 +0.1 -0.6 N.D.
phage Ra3_0.1 +2.4 +2.4 -0.2 +1.8 N.D.
phage Ra3_1 +6.0 +6.0 -0.7 +4.3 N.D.
phage Ra1_0.1 +6.2 +6.1 -0.7 +4.7 N.D.
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