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Protein
Homologs
Fitness for 5 genes in
Ralstonia sp. UNC404CL21Col
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR87_RS01600 and ABZR87_RS01605 are separated by 20 nucleotides
ABZR87_RS01605 and ABZR87_RS01610 are separated by 11 nucleotides
ABZR87_RS01610 and ABZR87_RS01615 are separated by 52 nucleotides
ABZR87_RS01615 and ABZR87_RS01620 are separated by 154 nucleotides
ABZR87_RS01600: ABZR87_RS01600 - monofunctional biosynthetic peptidoglycan transglycosylase, at 336,246 to 336,950
_RS01600
ABZR87_RS01605: ABZR87_RS01605 - shikimate dehydrogenase, at 336,971 to 337,888
_RS01605
ABZR87_RS01610: ABZR87_RS01610 - energy transducer TonB, at 337,900 to 338,814
_RS01610
ABZR87_RS01615: ABZR87_RS01615 - RNB domain-containing ribonuclease, at 338,867 to 340,963
_RS01615
ABZR87_RS01620: ABZR87_RS01620 - chorismate lyase, at 341,118 to 341,696
_RS01620
Group
Condition
ABZR87
_RS01600
ABZR87
_RS01605
ABZR87
_RS01610
ABZR87
_RS01615
ABZR87
_RS01620
carbon source
4-Hydroxybenzoic Acid (C)
-0.2
-5.3
-0.6
-4.0
+0.1
carbon source
Dodecandioic (C)
+0.1
-3.2
-0.6
-3.7
-0.2
carbon source
Octanoic (C)
+0.3
-2.3
-0.5
-3.9
-1.2
carbon source
Sebacic (C)
+0.2
-2.9
-0.4
-3.7
-0.4
carbon source
Dodecandioic (C)
+0.3
-4.0
-0.5
-2.6
-0.3
carbon source
Octanoic (C)
+0.1
-1.3
-0.2
-3.1
-1.4
carbon source
Azelaic (C)
+0.3
-2.1
-0.3
-4.1
+0.3
carbon source
Lauric (C)
+0.2
-1.5
-0.2
-4.2
-0.1
carbon source
Sebacic (C)
+0.3
-1.6
-0.4
-3.3
-0.6
carbon source
Heptanoic (C)
+0.1
-1.5
-0.0
-3.9
-0.1
carbon source
Heptanoic (C)
+0.3
-1.3
-0.2
-4.1
-0.2
carbon source
D-Glucose (C)
+0.1
-2.1
-0.4
-2.7
-0.3
carbon source
butyrate (C)
-0.0
-2.0
-0.1
-3.1
-0.2
carbon source
3-Hydroxypropionate (C)
-0.1
-5.3
-0.4
+0.4
+0.1
nitrogen source
nitrogen source nitrate 20mM
+0.1
-2.4
-0.3
-2.3
-0.2
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.0
-3.3
-0.5
-1.1
-0.3
nitrogen source
nitrogen source Ammonium chloride 20mM
+0.2
-3.6
-0.6
-1.0
-0.1
carbon source
1,2-Propanediol (C)
-0.0
-4.3
-0.4
-0.3
-0.1
nitrogen source
nitrogen source nitrate 5mM
+0.1
-2.3
-0.3
-2.5
+0.0
no_plant_soil
no_plant_soil sample 1; outgrowth in LB
+0.1
-2.0
-0.3
-2.7
-0.1
carbon source
butyrate (C)
+0.1
-1.9
-0.3
-2.8
+0.0
no_plant_soil
no_plant_soil sample 3; outgrowth in LB
-0.1
-1.5
-0.5
-2.7
+0.1
no_plant_rhizosphere
no_plant_rhizosphere sample 2; outgrowth in LB
-0.1
-1.9
-1.1
-1.7
+0.1
carbon source
propionate (C)
+0.1
-1.6
-0.3
-2.5
-0.4
carbon source
Pimelic (C)
+0.1
-1.0
-0.3
-3.3
+0.1
carbon source
D-Galactose (C)
-0.0
-3.7
-0.5
-0.4
+0.3
nitrogen source
nitrogen source nitrite 0.5mM
-0.2
-3.5
-0.3
+0.5
+0.3
carbon source
Protocatechuic Acid (C)
-0.2
+1.7
+0.9
-3.1
-0.0
phage
Ra1_0.1
-0.1
+0.2
+4.0
-1.6
-0.4
phage
Ra3_1
-0.0
-0.0
+4.2
-2.0
+0.0
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