Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS01595 and ABZR87_RS01600 are separated by 12 nucleotidesABZR87_RS01600 and ABZR87_RS01605 are separated by 20 nucleotidesABZR87_RS01605 and ABZR87_RS01610 are separated by 11 nucleotidesABZR87_RS01610 and ABZR87_RS01615 are separated by 52 nucleotides ABZR87_RS01595: ABZR87_RS01595 - magnesium/cobalt transporter CorA, at 335,271 to 336,233 _RS01595 ABZR87_RS01600: ABZR87_RS01600 - monofunctional biosynthetic peptidoglycan transglycosylase, at 336,246 to 336,950 _RS01600 ABZR87_RS01605: ABZR87_RS01605 - shikimate dehydrogenase, at 336,971 to 337,888 _RS01605 ABZR87_RS01610: ABZR87_RS01610 - energy transducer TonB, at 337,900 to 338,814 _RS01610 ABZR87_RS01615: ABZR87_RS01615 - RNB domain-containing ribonuclease, at 338,867 to 340,963 _RS01615
Group Condition ABZR87_RS01595 ABZR87_RS01600 ABZR87_RS01605 ABZR87_RS01610 ABZR87_RS01615
carbon source 4-Hydroxybenzoic Acid (C) -0.1 -0.2 -5.3 -0.6 -4.0
carbon source Dodecandioic (C) +0.2 +0.1 -3.2 -0.6 -3.7
carbon source Sebacic (C) +0.0 +0.2 -2.9 -0.4 -3.7
carbon source Octanoic (C) -0.3 +0.3 -2.3 -0.5 -3.9
carbon source Dodecandioic (C) +0.3 +0.3 -4.0 -0.5 -2.6
carbon source Azelaic (C) +0.1 +0.3 -2.1 -0.3 -4.1
carbon source Lauric (C) +0.2 +0.2 -1.5 -0.2 -4.2
carbon source Heptanoic (C) -0.2 +0.3 -1.3 -0.2 -4.1
carbon source Heptanoic (C) -0.0 +0.1 -1.5 -0.0 -3.9
nitrogen source nitrogen source nitrate 5mM -0.2 +0.1 -2.3 -0.3 -2.5
carbon source 3-Hydroxypropionate (C) +0.1 -0.1 -5.3 -0.4 +0.4
carbon source butyrate (C) +0.0 -0.0 -2.0 -0.1 -3.1
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) -0.2 -0.0 -3.3 -0.5 -1.1
nitrogen source nitrogen source nitrate 20mM -0.0 +0.1 -2.4 -0.3 -2.3
carbon source D-Glucose (C) +0.1 +0.1 -2.1 -0.4 -2.7
no_plant_soil no_plant_soil sample 3; outgrowth in LB -0.2 -0.1 -1.5 -0.5 -2.7
carbon source butyrate (C) -0.1 +0.1 -1.9 -0.3 -2.8
carbon source 1,2-Propanediol (C) +0.0 -0.0 -4.3 -0.4 -0.3
carbon source Octanoic (C) -0.4 +0.1 -1.3 -0.2 -3.1
no_plant_soil no_plant_soil sample 1; outgrowth in LB -0.0 +0.1 -2.0 -0.3 -2.7
no_plant_soil no_plant_soil sample 2; outgrowth in LB -0.3 +0.1 -1.5 -0.4 -2.7
carbon source Sebacic (C) +0.3 +0.3 -1.6 -0.4 -3.3
nitrogen source nitrogen source Ammonium chloride 20mM +0.2 +0.2 -3.6 -0.6 -1.0
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.4 -0.1 -1.9 -1.1 -1.7
carbon source Pimelic (C) +0.3 +0.1 -1.0 -0.3 -3.3
nitrogen source nitrogen source nitrite 5mM +0.1 +0.2 -3.1 -0.1 -1.3
nitrogen source nitrogen source nitrite 0.5mM +0.1 -0.2 -3.5 -0.3 +0.5
carbon source Protocatechuic Acid (C) -0.0 -0.2 +1.7 +0.9 -3.1
phage Ra1_0.1 -0.5 -0.1 +0.2 +4.0 -1.6
phage Ra3_1 -0.0 -0.0 -0.0 +4.2 -2.0
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