Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS01540 and ABZR87_RS01545 are separated by 57 nucleotidesABZR87_RS01545 and ABZR87_RS01550 are separated by 33 nucleotidesABZR87_RS01550 and ABZR87_RS01555 are separated by 101 nucleotidesABZR87_RS01555 and ABZR87_RS01560 overlap by 4 nucleotides ABZR87_RS01540: ABZR87_RS01540 - arabinose ABC transporter substrate-binding protein, at 324,024 to 325,028 _RS01540 ABZR87_RS01545: ABZR87_RS01545 - L-arabinose ABC transporter ATP-binding protein AraG, at 325,086 to 326,615 _RS01545 ABZR87_RS01550: ABZR87_RS01550 - L-arabinose ABC transporter permease AraH, at 326,649 to 327,659 _RS01550 ABZR87_RS01555: ABZR87_RS01555 - barstar family protein, at 327,761 to 328,384 _RS01555 ABZR87_RS01560: ABZR87_RS01560 - ribonuclease domain-containing protein, at 328,381 to 328,812 _RS01560
Group Condition ABZR87_RS01540 ABZR87_RS01545 ABZR87_RS01550 ABZR87_RS01555 ABZR87_RS01560
nitrogen source nitrogen source nitrate 5mM -0.3 +0.0 -0.6 -3.2 +0.7
root root EcoFAB sample 2; outgrowth in LB -0.5 +0.1 -0.1 -0.9 -0.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 -0.1 -0.3 -2.3 +0.5
nitrogen source nitrogen source nitrite 1mM -0.6 +0.2 -0.4 -1.4 -0.0
carbon source Heptanoic (C) +0.1 -0.2 +0.1 -1.5 -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 +0.0 -0.1 -2.2 +0.4
carbon source Disodium Glutarate (C) -0.0 -0.1 +0.1 -1.8 +0.3
rhizosphere rhizosphere sample 2; outgrowth in LB +0.4 +0.4 -0.3 -2.0 -0.0
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.7 -0.5 +0.2 -1.6 +1.1
soil soil EcoFAB sample 1; outgrowth in LB +0.3 +0.2 +0.3 -1.8 -0.5
soil soil sample 3; outgrowth in LB +0.2 +0.3 +0.3 -2.0 -0.2
soil soil sample 9; outgrowth in LB +0.4 +0.2 -0.7 -1.1 -0.1
phage Ra3_1 -0.3 -0.1 -0.1 -1.6 +0.8
nitrogen source nitrogen source nitrite 0.5mM +0.3 +0.0 -0.3 -1.7 +0.4
carbon source Octanoic (C) -0.0 +0.5 -0.5 +1.1 -2.2
soil soil sample 1; outgrowth in LB +0.5 +0.1 +0.3 -1.2 -0.2
nitrogen source nitrogen source nitrate 20mM -0.3 +0.4 -0.2 -0.7 +0.9
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +0.2 +0.2 +0.5 -1.2 +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.2 +0.1 -0.9 +1.3
carbon source Dodecandioic (C) +0.0 -0.0 -0.3 +1.5 -0.5
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.6 +0.2 -0.2 +1.5 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.0 +0.1 -1.1 +2.4
carbon source Octanoic (C) -0.3 +0.2 +0.2 +2.3 -0.6
carbon source Dodecandioic (C) -0.1 +0.0 +0.4 +1.8 -0.2
rhizosphere rhizosphere sample 1; outgrowth in LB -0.2 +0.2 +0.7 +1.3 -0.1
carbon source D-Galactose (C) +1.2 +1.0 +0.3 -0.0 -0.2
carbon source Lauric (C) -0.1 +0.2 +0.2 +2.3 -0.2
micoeukaryotes Dictyostellum sp.mixed culture-2 +0.0 +0.3 +0.2 +1.6 +0.3
micoeukaryotes C.elegans, mixed culture-2 +0.1 -0.0 +0.5 +1.8 +0.3
carbon source D-Galactose (C) +1.3 +1.0 +0.7 +0.3 -0.2
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ABZR87_RS01545
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