Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS01440 and ABZR87_RS01445 are separated by 115 nucleotidesABZR87_RS01445 and ABZR87_RS01450 are separated by 20 nucleotidesABZR87_RS01450 and ABZR87_RS01455 overlap by 4 nucleotidesABZR87_RS01455 and ABZR87_RS01460 overlap by 4 nucleotides ABZR87_RS01440: ABZR87_RS01440 - transketolase, at 302,275 to 304,290 _RS01440 ABZR87_RS01445: ABZR87_RS01445 - galactonate dehydratase, at 304,406 to 305,554 _RS01445 ABZR87_RS01450: ABZR87_RS01450 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 305,575 to 306,201 _RS01450 ABZR87_RS01455: ABZR87_RS01455 - SDR family oxidoreductase, at 306,198 to 307,004 _RS01455 ABZR87_RS01460: ABZR87_RS01460 - aldose 1-epimerase, at 307,001 to 307,885 _RS01460
Group Condition ABZR87_RS01440 ABZR87_RS01445 ABZR87_RS01450 ABZR87_RS01455 ABZR87_RS01460
carbon source D-Galactose (C) N.D. -4.2 -7.9 -1.7 -0.2
carbon source D-Galactose (C) N.D. -4.8 -6.4 -1.2 -0.3
root root EcoFAB sample 2; outgrowth in LB N.D. -0.0 -5.2 +0.1 -0.5
root root EcoFAB sample 1; outgrowth in LB N.D. +0.3 -4.2 -0.5 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.1 -3.1 -1.0 -0.1
root root sample 6; outgrowth in LB N.D. +0.4 -5.0 -0.0 +0.5
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. +0.3 -3.5 -0.5 +0.1
soil soil EcoFAB sample 1; outgrowth in LB N.D. +0.0 -2.1 -1.1 -0.3
root root sample 4; outgrowth in LB N.D. +0.3 -4.4 +0.1 +0.5
rhizosphere rhizosphere sample 7; outgrowth in LB N.D. +0.1 -3.3 -0.4 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.1 -2.4 -0.8 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.2 -2.8 -0.2 -0.1
root root sample 5; outgrowth in LB N.D. +0.1 -2.1 -0.3 -0.5
rhizosphere rhizosphere sample 6; outgrowth in LB N.D. +0.2 -2.8 +0.2 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.1 -1.8 -0.1 -0.4
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB N.D. +0.2 -2.3 -0.3 +0.2
rhizosphere rhizosphere sample 8; outgrowth in LB N.D. +0.1 -1.7 -0.4 -0.2
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB N.D. +0.1 -1.7 -0.3 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.2 -1.0 -0.7 -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.1 -2.1 +0.2 +0.1
carbon source D-Xylose (C) N.D. -0.0 -2.1 +0.2 +0.2
micoeukaryotes C.elegans, mixed culture-1 N.D. +0.1 -1.3 -0.3 -0.2
rhizosphere rhizosphere sample 9; outgrowth in LB N.D. +0.0 -2.5 +0.4 +0.4
rhizosphere rhizosphere sample 4; outgrowth in LB N.D. +0.3 -1.2 -0.4 -0.4
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. +0.2 -1.7 +0.1 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.0 -1.2 +0.3 -0.5
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB N.D. +0.5 -2.5 +0.3 +0.4
carbon source Protocatechuic Acid (C) N.D. -0.0 -0.8 -0.9 +0.6
no_plant_soil no_plant_soil sample 1; outgrowth in LB N.D. +0.3 -1.4 +0.4 +0.1
nitrogen source nitrogen source nitrite 0.5mM N.D. -0.1 -0.9 +0.7 +0.7
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