Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS01355 and ABZR87_RS01360 are separated by 162 nucleotidesABZR87_RS01360 and ABZR87_RS01365 are separated by 655 nucleotidesABZR87_RS01365 and ABZR87_RS01370 are separated by 19 nucleotidesABZR87_RS01370 and ABZR87_RS01375 are separated by 7 nucleotides ABZR87_RS01355: ABZR87_RS01355 - NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta, at 281,535 to 282,995 _RS01355 ABZR87_RS01360: ABZR87_RS01360 - response regulator, at 283,158 to 284,195 _RS01360 ABZR87_RS01365: ABZR87_RS01365 - class I SAM-dependent methyltransferase PhcB, at 284,851 to 286,263 _RS01365 ABZR87_RS01370: ABZR87_RS01370 - ATP-binding protein, at 286,283 to 287,611 _RS01370 ABZR87_RS01375: ABZR87_RS01375 - two-component system hybrid sensor histidine kinase/response regulator PhcR, at 287,619 to 288,725 _RS01375
Group Condition ABZR87_RS01355 ABZR87_RS01360 ABZR87_RS01365 ABZR87_RS01370 ABZR87_RS01375
carbon source Octanoic (C) -0.3 -3.5 +1.1 +1.4 +2.6
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +0.1 -1.0 +2.1 +2.9 +4.5
no_plant_soil no_plant_soil sample 1; outgrowth in LB +0.1 -0.4 +1.7 +2.9 +4.4
soil soil sample 3; outgrowth in LB -0.0 -0.2 +3.0 +4.7 +8.1
soil soil sample 4; outgrowth in LB -0.1 -0.2 +3.0 +4.9 +8.0
soil soil sample 6; outgrowth in LB -0.1 -0.2 +3.1 +4.6 +8.1
soil soil EcoFAB sample 2; outgrowth in LB +0.1 -0.6 +3.1 +4.9 +8.7
soil soil EcoFAB sample 1; outgrowth in LB -0.0 -1.8 +3.5 +5.6 +9.0
soil soil sample 7; outgrowth in LB +0.0 -0.1 +3.1 +4.9 +8.9
soil soil sample 5; outgrowth in LB -0.0 +0.1 +3.4 +5.2 +8.2
soil soil sample 2; outgrowth in LB +0.0 -0.3 +3.1 +5.1 +9.0
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.1 -0.7 +3.0 +5.4 +9.4
soil soil sample 9; outgrowth in LB +0.0 -0.4 +3.4 +5.3 +8.7
soil soil sample 8; outgrowth in LB +0.1 -0.1 +3.1 +5.0 +9.1
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -0.0 -0.5 +3.3 +5.2 +9.5
soil soil sample 1; outgrowth in LB +0.1 -0.1 +3.4 +5.4 +9.3
root root EcoFAB sample 1; outgrowth in LB -0.0 -0.6 +3.2 +5.7 +10.0
root root EcoFAB sample 2; outgrowth in LB -0.2 -0.8 +3.9 +6.0 +9.8
rhizosphere rhizosphere sample 5; outgrowth in LB -0.1 -0.4 +4.8 +6.9 +10.5
rhizosphere rhizosphere sample 4; outgrowth in LB -0.1 -0.4 +5.0 +6.9 +10.5
rhizosphere rhizosphere sample 7; outgrowth in LB -0.1 -0.6 +5.2 +7.4 +11.2
rhizosphere rhizosphere sample 8; outgrowth in LB -0.0 -0.5 +5.3 +7.2 +11.2
rhizosphere rhizosphere sample 6; outgrowth in LB +0.2 -0.5 +5.1 +7.1 +11.3
root root sample 4; outgrowth in LB -0.1 -0.5 +5.4 +7.4 +11.0
root root sample 5; outgrowth in LB -0.2 -1.1 +5.9 +7.8 +10.9
rhizosphere rhizosphere sample 1; outgrowth in LB +0.0 -0.2 +4.8 +7.3 +11.5
rhizosphere rhizosphere sample 9; outgrowth in LB +0.0 -0.7 +5.7 +7.5 +11.1
rhizosphere rhizosphere sample 2; outgrowth in LB -0.1 -0.8 +5.8 +7.6 +11.9
rhizosphere rhizosphere sample 3; outgrowth in LB -0.2 -0.5 +5.9 +7.7 +11.7
root root sample 6; outgrowth in LB +0.1 -1.0 +6.5 +8.3 +12.0
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