Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS01055 and ABZR87_RS01060 are separated by 111 nucleotidesABZR87_RS01060 and ABZR87_RS01065 are separated by 10 nucleotidesABZR87_RS01065 and ABZR87_RS01070 are separated by 102 nucleotidesABZR87_RS01070 and ABZR87_RS01075 are separated by 261 nucleotides ABZR87_RS01055: ABZR87_RS01055 - heat-inducible transcriptional repressor HrcA, at 210,837 to 211,895 _RS01055 ABZR87_RS01060: ABZR87_RS01060 - NAD kinase, at 212,007 to 212,945 _RS01060 ABZR87_RS01065: ABZR87_RS01065 - DNA repair protein RecN, at 212,956 to 214,662 _RS01065 ABZR87_RS01070: ABZR87_RS01070 - hypothetical protein, at 214,765 to 215,211 _RS01070 ABZR87_RS01075: ABZR87_RS01075 - MprA protease, GlyGly-CTERM protein-sorting domain-containing form, at 215,473 to 217,122 _RS01075
Group Condition ABZR87_RS01055 ABZR87_RS01060 ABZR87_RS01065 ABZR87_RS01070 ABZR87_RS01075
carbon source Octanoic (C) -2.0 N.D. -0.2 -0.5 -0.1
carbon source Octanoic (C) -2.9 N.D. -0.3 +0.3 +0.1
carbon source Azelaic (C) -0.4 N.D. +0.1 -1.8 -0.2
phage Ra1_0.1 -1.2 N.D. +0.1 -0.6 -0.4
carbon source Dodecandioic (C) -1.5 N.D. -0.1 -0.7 +0.2
carbon source Lauric (C) -1.4 N.D. -0.1 -0.4 +0.1
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.8 N.D. -0.2 -0.6 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 N.D. -0.1 -1.4 -0.5
carbon source Protocatechuic Acid (C) -1.5 N.D. -0.2 +0.3 -0.2
carbon source Heptanoic (C) -2.0 N.D. -0.0 +0.1 +0.5
carbon source Heptanoic (C) -2.0 N.D. +0.1 +0.2 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.0 N.D. -0.5 +0.0 +0.1
phage Ra3_1 -1.3 N.D. -0.0 +0.2 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 N.D. +0.3 -0.5 -0.9
root root sample 6; outgrowth in LB -1.3 N.D. +0.0 -0.6 +0.6
carbon source Dodecandioic (C) -1.6 N.D. -0.2 +0.5 +0.2
nitrogen source nitrogen source nitrite 5mM +0.1 N.D. -0.2 +0.3 -1.2
root root sample 5; outgrowth in LB -0.7 N.D. -0.8 +0.2 +0.3
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.7 N.D. -0.2 -0.4 +0.4
nitrogen source nitrogen source nitrite 5mM +0.1 N.D. -0.2 +0.5 -1.1
rhizosphere rhizosphere sample 2; outgrowth in LB -0.7 N.D. -0.4 -0.1 +0.5
carbon source Sebacic (C) -1.6 N.D. +0.1 +1.0 +0.0
soil soil EcoFAB sample 1; outgrowth in LB -1.2 N.D. +0.0 -0.1 +0.9
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) +0.7 N.D. -0.6 -0.2 -0.1
root root EcoFAB sample 2; outgrowth in LB -0.4 N.D. +0.1 -0.4 +0.8
soil soil EcoFAB sample 2; outgrowth in LB -0.4 N.D. +0.0 -0.1 +1.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.6 N.D. -0.3 +2.2 -0.4
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +2.7 N.D. -0.6 +0.0 +0.8
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +4.3 N.D. -0.3 -0.8 +0.8
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +5.3 N.D. -0.6 +0.1 +1.0
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