Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS01045 and ABZR87_RS01050 overlap by 4 nucleotidesABZR87_RS01050 and ABZR87_RS01055 are separated by 125 nucleotidesABZR87_RS01055 and ABZR87_RS01060 are separated by 111 nucleotidesABZR87_RS01060 and ABZR87_RS01065 are separated by 10 nucleotides ABZR87_RS01045: ABZR87_RS01045 - ATP-binding cassette domain-containing protein, at 208,859 to 209,650 _RS01045 ABZR87_RS01050: ABZR87_RS01050 - taurine ABC transporter substrate-binding protein, at 209,647 to 210,711 _RS01050 ABZR87_RS01055: ABZR87_RS01055 - heat-inducible transcriptional repressor HrcA, at 210,837 to 211,895 _RS01055 ABZR87_RS01060: ABZR87_RS01060 - NAD kinase, at 212,007 to 212,945 _RS01060 ABZR87_RS01065: ABZR87_RS01065 - DNA repair protein RecN, at 212,956 to 214,662 _RS01065
Group Condition ABZR87_RS01045 ABZR87_RS01050 ABZR87_RS01055 ABZR87_RS01060 ABZR87_RS01065
carbon source Octanoic (C) -0.7 -0.2 -2.0 N.D. -0.2
carbon source Heptanoic (C) -0.7 -0.2 -2.0 N.D. -0.0
carbon source Octanoic (C) +0.2 +0.3 -2.9 N.D. -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.7 -0.0 -1.0 N.D. -0.5
root root sample 5; outgrowth in LB -0.6 +0.1 -0.7 N.D. -0.8
carbon source Heptanoic (C) +0.1 -0.1 -2.0 N.D. +0.1
carbon source Dodecandioic (C) -0.3 +0.1 -1.5 N.D. -0.1
carbon source butyrate (C) -0.6 -0.0 -1.2 N.D. +0.0
carbon source Dodecandioic (C) +0.0 +0.1 -1.6 N.D. -0.2
phage Ra3_1 -0.4 -0.0 -1.3 N.D. -0.0
carbon source Protocatechuic Acid (C) -0.1 +0.0 -1.5 N.D. -0.2
carbon source Lauric (C) -0.1 -0.0 -1.4 N.D. -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.6 -0.1 -0.7 N.D. -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.5 -0.1 -0.6 N.D. -0.3
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.6 +0.1 -0.7 N.D. -0.2
phage Ra1_0.1 -0.2 -0.0 -1.2 N.D. +0.1
root root sample 6; outgrowth in LB -0.3 +0.3 -1.3 N.D. +0.0
carbon source Sebacic (C) +0.1 +0.2 -1.6 N.D. +0.1
nitrogen source nitrogen source nitrate 20mM -0.7 +0.2 -0.3 N.D. -0.2
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 -0.2 -0.8 N.D. -0.2
soil soil EcoFAB sample 1; outgrowth in LB +0.7 +0.4 -1.2 N.D. +0.0
rhizosphere rhizosphere sample 2; outgrowth in LB +0.6 +0.4 -0.7 N.D. -0.4
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) -0.2 +0.1 +0.7 N.D. -0.6
no_plant_soil no_plant_soil sample 3; outgrowth in LB -0.5 +0.0 +0.8 N.D. -0.1
rhizosphere rhizosphere sample 3; outgrowth in LB +1.0 +0.1 -0.3 N.D. -0.0
carbon source 4-Hydroxybenzoic Acid (C) +0.4 +0.4 +0.7 N.D. -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.3 +0.1 -0.2 N.D. +0.2
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.3 -0.1 +2.7 N.D. -0.6
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.2 +0.1 +4.3 N.D. -0.3
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.3 -0.0 +5.3 N.D. -0.6
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