Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS01020 and ABZR87_RS01025 are separated by 2 nucleotidesABZR87_RS01025 and ABZR87_RS01030 are separated by 25 nucleotidesABZR87_RS01030 and ABZR87_RS01035 are separated by 154 nucleotidesABZR87_RS01035 and ABZR87_RS01040 are separated by 7 nucleotides ABZR87_RS01020: ABZR87_RS01020 - formimidoylglutamase, at 202,837 to 203,814 _RS01020 ABZR87_RS01025: ABZR87_RS01025 - histidine ammonia-lyase, at 203,817 to 205,373 _RS01025 ABZR87_RS01030: ABZR87_RS01030 - urocanate hydratase, at 205,399 to 207,117 _RS01030 ABZR87_RS01035: ABZR87_RS01035 - histidine utilization repressor, at 207,272 to 207,985 _RS01035 ABZR87_RS01040: ABZR87_RS01040 - ABC transporter permease subunit, at 207,993 to 208,862 _RS01040
Group Condition ABZR87_RS01020 ABZR87_RS01025 ABZR87_RS01030 ABZR87_RS01035 ABZR87_RS01040
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.3 -0.2 -4.5 +0.1
carbon source Octanoic (C) +0.3 -0.0 +0.5 -5.1 -0.2
carbon source Heptanoic (C) -0.2 -0.2 +0.1 -3.7 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 -0.3 -0.0 -3.5 -0.1
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 +0.4 +0.1 -3.7 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.1 +0.1 -2.9 +0.1
soil soil sample 9; outgrowth in LB -0.4 -0.3 +0.2 -2.3 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.5 -0.0 -2.2 -0.2
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB +0.1 +0.0 -0.0 -2.7 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.3 -0.1 -2.2 +0.0
carbon source Sebacic (C) +0.2 -0.4 +0.3 -2.6 -0.1
rhizosphere rhizosphere sample 1; outgrowth in LB +0.0 -0.0 +0.3 -2.9 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.4 +0.1 -3.5 +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.4 +0.3 -2.3 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.1 +0.2 -2.4 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.2 +0.5 -2.6 -0.1
carbon source Sebacic (C) -0.2 +0.2 +0.3 -2.7 +0.2
carbon source Octanoic (C) +0.3 +0.2 +0.3 -3.4 +0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 +0.3 -0.0 -2.4 +0.0
carbon source Heptanoic (C) +0.1 -0.0 +0.2 -2.6 +0.2
carbon source Azelaic (C) +0.3 -0.2 +0.3 -2.5 +0.1
root root sample 6; outgrowth in LB -0.2 -0.9 +0.8 -1.8 +0.2
rhizosphere rhizosphere sample 9; outgrowth in LB -0.1 +0.0 +0.7 -2.2 -0.0
carbon source Lauric (C) -0.2 +0.1 +0.5 -2.2 +0.2
carbon source Dodecandioic (C) -0.1 +0.1 +0.5 -1.9 +0.1
carbon source Dodecandioic (C) +0.1 +0.1 +0.6 -2.0 +0.1
phage Ra1_0.1 -0.6 +0.1 +0.4 +1.8 +0.2
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.2 +0.5 +0.1 +4.4 +0.2
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.1 +0.2 +0.3 +7.1 +0.1
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.2 +0.1 +0.0 +8.1 +0.0
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ABZR87_RS01020
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ABZR87_RS01025
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ABZR87_RS01040
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