Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS01005 and ABZR87_RS01010 overlap by 4 nucleotidesABZR87_RS01010 and ABZR87_RS01015 are separated by 56 nucleotidesABZR87_RS01015 and ABZR87_RS01020 overlap by 8 nucleotidesABZR87_RS01020 and ABZR87_RS01025 are separated by 2 nucleotides ABZR87_RS01005: ABZR87_RS01005 - RNA-binding S4 domain-containing protein, at 200,042 to 200,440 _RS01005 ABZR87_RS01010: ABZR87_RS01010 - ferrochelatase, at 200,437 to 201,552 _RS01010 ABZR87_RS01015: ABZR87_RS01015 - imidazolonepropionase, at 201,609 to 202,844 _RS01015 ABZR87_RS01020: ABZR87_RS01020 - formimidoylglutamase, at 202,837 to 203,814 _RS01020 ABZR87_RS01025: ABZR87_RS01025 - histidine ammonia-lyase, at 203,817 to 205,373 _RS01025
Group Condition ABZR87_RS01005 ABZR87_RS01010 ABZR87_RS01015 ABZR87_RS01020 ABZR87_RS01025
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.8 N.D. -0.6 +0.0 -0.3
root root sample 6; outgrowth in LB -0.2 N.D. -0.3 -0.2 -0.9
soil soil sample 9; outgrowth in LB -0.8 N.D. +0.0 -0.4 -0.3
phage Ra3_1 -0.3 N.D. -0.6 -0.2 -0.2
micoeukaryotes Acanthamoeba sp., muxed culture-2 -1.0 N.D. -0.2 -0.1 +0.0
phage Ra1_0.1 -0.0 N.D. -0.7 -0.6 +0.1
phage Ra3_0.1 -0.7 N.D. -0.5 +0.1 +0.1
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.6 N.D. +0.9 -0.4 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.8 N.D. +0.4 -0.2 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.6 N.D. +0.4 -0.1 -0.1
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.5 N.D. -0.1 -0.2 +0.5
carbon source Protocatechuic Acid (C) +0.8 N.D. -0.4 -0.1 -0.1
rhizosphere rhizosphere sample 7; outgrowth in LB +0.6 N.D. -0.2 -0.1 +0.2
carbon source 4-Hydroxybenzoic Acid (C) +1.0 N.D. -0.1 -0.1 -0.2
soil soil EcoFAB sample 2; outgrowth in LB +0.6 N.D. +0.3 -0.1 -0.2
rhizosphere rhizosphere sample 6; outgrowth in LB +0.7 N.D. -0.1 -0.2 +0.3
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +0.8 N.D. -0.0 -0.2 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 N.D. -0.1 -0.2 +0.4
nitrogen source nitrogen source nitrate 20mM +0.7 N.D. +0.0 -0.2 +0.2
nitrogen source nitrogen source Ammonium chloride 20mM +0.7 N.D. -0.0 +0.3 -0.1
nitrogen source nitrogen source nitrite 0.5mM +0.7 N.D. -0.1 +0.4 -0.1
soil soil EcoFAB sample 1; outgrowth in LB +0.6 N.D. -0.6 +0.6 +0.3
root root sample 5; outgrowth in LB -0.1 N.D. +0.3 +0.4 +0.3
nitrogen source nitrogen source nitrate 20mM +0.9 N.D. +0.1 -0.1 -0.0
carbon source D-Glucose (C) +0.2 N.D. +0.2 +0.3 +0.5
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.9 N.D. -0.2 +0.2 +0.3
rhizosphere rhizosphere sample 3; outgrowth in LB +1.2 N.D. -0.3 +0.1 +0.3
carbon source Octanoic (C) +0.9 N.D. +0.3 +0.3 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.2 N.D. +0.2 +0.2 -0.1
root root sample 4; outgrowth in LB +1.1 N.D. +0.2 -0.0 +0.5
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