Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS00950 and ABZR87_RS00955 are separated by 11 nucleotidesABZR87_RS00955 and ABZR87_RS00960 overlap by 4 nucleotidesABZR87_RS00960 and ABZR87_RS00965 overlap by 57 nucleotidesABZR87_RS00965 and ABZR87_RS00970 are separated by 150 nucleotides ABZR87_RS00950: ABZR87_RS00950 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 188,703 to 189,521 _RS00950 ABZR87_RS00955: ABZR87_RS00955 - ABC transporter permease, at 189,533 to 190,240 _RS00955 ABZR87_RS00960: ABZR87_RS00960 - ATP-binding cassette domain-containing protein, at 190,237 to 190,935 _RS00960 ABZR87_RS00965: ABZR87_RS00965 - bifunctional anthranilate synthase component I family protein/class IV aminotransferase, at 190,879 to 192,777 _RS00965 ABZR87_RS00970: ABZR87_RS00970 - molecular chaperone DnaJ, at 192,928 to 194,076 _RS00970
Group Condition ABZR87_RS00950 ABZR87_RS00955 ABZR87_RS00960 ABZR87_RS00965 ABZR87_RS00970
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.4 -0.2 -0.2 -5.1
carbon source Sebacic (C) N.D. -0.4 +0.4 -3.9 -2.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.3 -0.3 -0.1 -4.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.0 -0.2 -0.2 -5.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.2 -0.0 -0.3 -4.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.1 -0.3 +0.4 -4.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.1 -0.2 +0.1 -5.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.2 -0.0 +0.1 -5.0
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.6 -0.2 -0.5 -3.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.7 -0.5 -0.2 -4.9
carbon source Octanoic (C) N.D. +0.1 +0.1 -3.9 -0.8
carbon source Lauric (C) N.D. -0.3 -0.3 -2.7 -1.1
carbon source Octanoic (C) N.D. -0.5 +0.1 -3.2 -0.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.1 -0.2 +0.0 -2.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.1 -0.6 -0.1 -3.3
nitrogen source nitrogen source nitrate 5mM N.D. -0.1 +0.2 -0.0 -4.0
carbon source Dodecandioic (C) N.D. -0.2 +0.3 -1.9 -1.9
nitrogen source nitrogen source nitrate 5mM N.D. -0.1 +0.5 +0.1 -4.1
no_plant_soil no_plant_soil sample 1; outgrowth in LB N.D. -0.7 -0.5 +0.1 -2.5
no_plant_soil no_plant_soil sample 2; outgrowth in LB N.D. -0.5 -0.4 -0.0 -2.4
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB N.D. -0.5 -0.5 -0.2 -2.0
soil soil sample 5; outgrowth in LB N.D. -0.7 -0.2 -0.1 -2.1
soil soil sample 6; outgrowth in LB N.D. -0.3 -0.3 -0.1 -2.3
carbon source Carbon source D-Glucose 10 mM N.D. -0.2 +0.0 +0.0 -2.7
carbon source Dodecandioic (C) N.D. +0.2 +0.1 -2.0 -1.2
soil soil sample 8; outgrowth in LB N.D. -0.3 +0.1 -0.0 -2.4
carbon source Pimelic (C) N.D. +0.0 -0.1 +0.1 -2.7
micoeukaryotes C.elegans, mixed culture-2 N.D. +0.0 +0.2 +0.1 -2.6
carbon source 4-Hydroxybenzoic Acid (C) N.D. -1.3 -0.5 +0.2 +1.3
phage Ra3_1 N.D. +0.5 -0.4 -0.0 +2.2
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ABZR87_RS00950
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ABZR87_RS00955
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