Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS00945 and ABZR87_RS00950 are separated by 60 nucleotidesABZR87_RS00950 and ABZR87_RS00955 are separated by 11 nucleotidesABZR87_RS00955 and ABZR87_RS00960 overlap by 4 nucleotidesABZR87_RS00960 and ABZR87_RS00965 overlap by 57 nucleotides ABZR87_RS00945: ABZR87_RS00945 - deoxynucleoside kinase, at 187,998 to 188,642 _RS00945 ABZR87_RS00950: ABZR87_RS00950 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 188,703 to 189,521 _RS00950 ABZR87_RS00955: ABZR87_RS00955 - ABC transporter permease, at 189,533 to 190,240 _RS00955 ABZR87_RS00960: ABZR87_RS00960 - ATP-binding cassette domain-containing protein, at 190,237 to 190,935 _RS00960 ABZR87_RS00965: ABZR87_RS00965 - bifunctional anthranilate synthase component I family protein/class IV aminotransferase, at 190,879 to 192,777 _RS00965
Group Condition ABZR87_RS00945 ABZR87_RS00950 ABZR87_RS00955 ABZR87_RS00960 ABZR87_RS00965
carbon source Sebacic (C) -0.0 N.D. -0.4 +0.4 -3.9
carbon source Octanoic (C) +0.0 N.D. +0.1 +0.1 -3.9
carbon source Lauric (C) +0.0 N.D. -0.3 -0.3 -2.7
carbon source Octanoic (C) +0.3 N.D. -0.5 +0.1 -3.2
carbon source Dodecandioic (C) -0.1 N.D. -0.2 +0.3 -1.9
carbon source Heptanoic (C) -0.3 N.D. -0.5 -0.1 -0.8
carbon source 4-Hydroxybenzoic Acid (C) -0.0 N.D. -1.3 -0.5 +0.2
carbon source Heptanoic (C) -0.4 N.D. -0.2 -0.3 -0.7
carbon source Dodecandioic (C) +0.1 N.D. +0.2 +0.1 -2.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 N.D. -1.1 -0.2 +0.0
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.1 N.D. -0.5 -0.5 -0.2
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 N.D. -0.6 -0.2 -0.5
rhizosphere rhizosphere sample 9; outgrowth in LB -0.2 N.D. -0.5 -0.2 -0.3
no_plant_soil no_plant_soil sample 1; outgrowth in LB -0.0 N.D. -0.7 -0.5 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 N.D. -1.1 -0.3 +0.4
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.1 N.D. -0.3 -0.6 -0.0
soil soil sample 5; outgrowth in LB -0.1 N.D. -0.7 -0.2 -0.1
no_plant_soil no_plant_soil sample 3; outgrowth in LB -0.0 N.D. -0.5 -0.5 +0.0
no_plant_soil no_plant_soil sample 2; outgrowth in LB +0.0 N.D. -0.5 -0.4 -0.0
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.1 N.D. -0.0 -0.8 -0.1
carbon source propionate (C) -0.0 N.D. -0.5 -0.4 +0.1
carbon source succinate (C) -0.1 N.D. +0.3 -0.0 -0.9
root root EcoFAB sample 1; outgrowth in LB +0.2 N.D. -0.3 -0.5 -0.1
carbon source acetate (C) +0.1 N.D. +0.2 -0.1 -0.8
carbon source succinate (C) +0.1 N.D. +0.3 -0.0 -0.8
phage Ra1_0.1 -0.2 N.D. +0.4 -0.5 +0.0
carbon source Azelaic (C) -0.0 N.D. +0.2 +0.2 -0.6
carbon source butyrate (C) +0.0 N.D. +0.5 +0.0 -0.7
phage Ra3_1 -0.1 N.D. +0.5 -0.4 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 N.D. +0.7 -0.5 -0.2
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ABZR87_RS00945
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ABZR87_RS00950
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ABZR87_RS00960
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ABZR87_RS00965
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