Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS00805 and ABZR87_RS00810 overlap by 4 nucleotidesABZR87_RS00810 and ABZR87_RS00815 are separated by 160 nucleotidesABZR87_RS00815 and ABZR87_RS00820 are separated by 67 nucleotidesABZR87_RS00820 and ABZR87_RS00825 are separated by 105 nucleotides ABZR87_RS00805: ABZR87_RS00805 - glycerol-3-phosphate 1-O-acyltransferase PlsY, at 161,077 to 161,700 _RS00805 ABZR87_RS00810: ABZR87_RS00810 - helix-turn-helix domain-containing protein, at 161,697 to 162,713 _RS00810 ABZR87_RS00815: ABZR87_RS00815 - acylase, at 162,874 to 165,258 _RS00815 ABZR87_RS00820: ABZR87_RS00820 - YajQ family cyclic di-GMP-binding protein, at 165,326 to 165,811 _RS00820 ABZR87_RS00825: ABZR87_RS00825 - UDP-N-acetylmuramate dehydrogenase, at 165,917 to 166,945 _RS00825
Group Condition ABZR87_RS00805 ABZR87_RS00810 ABZR87_RS00815 ABZR87_RS00820 ABZR87_RS00825
soil soil EcoFAB sample 1; outgrowth in LB N.D. -0.8 -0.0 -5.1 N.D.
carbon source Octanoic (C) N.D. +0.0 -0.1 -2.3 N.D.
root root sample 6; outgrowth in LB N.D. -0.1 -0.2 -1.8 N.D.
nitrogen source nitrogen source nitrate 5mM N.D. -0.2 +0.2 -2.0 N.D.
rhizosphere rhizosphere sample 3; outgrowth in LB N.D. -0.6 -0.2 -0.4 N.D.
carbon source adipate (C) N.D. -0.1 +0.0 -1.0 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.5 +0.1 -0.4 N.D.
carbon source Hexanoic (C) N.D. -0.6 +0.1 -0.3 N.D.
carbon source Heptanoic (C) N.D. +0.3 +0.0 -1.0 N.D.
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB N.D. +0.3 -0.1 -0.8 N.D.
rhizosphere rhizosphere sample 9; outgrowth in LB N.D. -0.6 -0.2 +0.5 N.D.
carbon source 4-Hydroxybenzoic Acid (C) N.D. +1.0 +0.1 -1.4 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.0 +0.4 -0.7 N.D.
nitrogen source nitrogen source nitrite 0.5mM N.D. +0.5 -0.1 -0.6 N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. +0.3 +0.1 -0.6 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.6 -0.1 +0.7 N.D.
nitrogen source nitrogen source nitrite 1mM N.D. +0.2 +0.3 -0.4 N.D.
rhizosphere rhizosphere sample 7; outgrowth in LB N.D. +0.3 -0.5 +0.3 N.D.
nitrogen source nitrogen source nitrite 0.5mM N.D. -0.7 +0.2 +0.6 N.D.
carbon source Octanoic (C) N.D. +0.3 -0.4 +0.3 N.D.
phage Ra1_0.1 N.D. -0.4 +0.1 +0.8 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.2 +0.2 +0.6 N.D.
phage Ra3_0.1 N.D. -0.4 +0.1 +0.9 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.0 -0.1 +0.9 N.D.
nitrogen source nitrogen source nitrate 20mM N.D. +0.6 -0.0 +0.3 N.D.
no_plant_soil no_plant_soil sample 1; outgrowth in LB N.D. +0.5 +0.1 +0.5 N.D.
phage Ra3_0.01 N.D. +0.2 +0.2 +0.7 N.D.
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB N.D. +0.7 +0.4 +0.6 N.D.
carbon source Sebacic (C) N.D. +0.7 +0.2 +0.8 N.D.
root root EcoFAB sample 2; outgrowth in LB N.D. +0.9 +0.1 +1.0 N.D.
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