Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS00755 and ABZR87_RS00760 are separated by 0 nucleotidesABZR87_RS00760 and ABZR87_RS00765 are separated by 3 nucleotidesABZR87_RS00765 and ABZR87_RS00770 overlap by 7 nucleotidesABZR87_RS00770 and ABZR87_RS00775 are separated by 16 nucleotides ABZR87_RS00755: ABZR87_RS00755 - bile acid:sodium symporter family protein, at 152,167 to 153,198 _RS00755 ABZR87_RS00760: ABZR87_RS00760 - GNAT family N-acetyltransferase, at 153,199 to 153,744 _RS00760 ABZR87_RS00765: ABZR87_RS00765 - N-acetylmuramoyl-L-alanine amidase, at 153,748 to 155,271 _RS00765 ABZR87_RS00770: ABZR87_RS00770 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 155,265 to 155,843 _RS00770 ABZR87_RS00775: ABZR87_RS00775 - tRNA epoxyqueuosine(34) reductase QueG, at 155,860 to 157,011 _RS00775
Group Condition ABZR87_RS00755 ABZR87_RS00760 ABZR87_RS00765 ABZR87_RS00770 ABZR87_RS00775
carbon source Lauric (C) -0.2 -0.1 -6.2 N.D. -0.2
carbon source Sebacic (C) -0.4 +0.2 -2.9 N.D. +0.0
carbon source Octanoic (C) +0.4 -0.1 -2.4 N.D. -0.8
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -1.0 -1.6 N.D. +0.2
carbon source Heptanoic (C) +0.1 -0.4 -1.0 N.D. -0.0
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.4 +0.1 -1.1 N.D. +0.1
carbon source Octanoic (C) +0.9 +0.5 -1.7 N.D. -0.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 -0.6 -1.0 N.D. -0.0
carbon source Dodecandioic (C) +0.3 -0.3 -1.2 N.D. +0.1
root root sample 5; outgrowth in LB -0.3 -0.2 -0.7 N.D. +0.1
phage Ra1_0.1 -0.1 -0.5 -0.5 N.D. +0.1
root root sample 6; outgrowth in LB -0.0 -1.2 +0.3 N.D. -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.0 -1.1 N.D. +0.2
carbon source Azelaic (C) -0.2 -0.4 -0.4 N.D. +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.7 -0.7 N.D. +0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.2 -0.8 N.D. -0.0
soil soil EcoFAB sample 1; outgrowth in LB -0.4 +0.5 +0.2 N.D. -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.3 -0.7 N.D. -0.1
phage Ra3_1 +0.3 +0.0 -0.7 N.D. +0.2
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.8 +0.5 +0.2 N.D. -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.8 -1.3 N.D. +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 +0.2 -0.3 N.D. +0.5
rhizosphere rhizosphere sample 3; outgrowth in LB +0.2 -0.6 +0.4 N.D. -0.0
root root EcoFAB sample 2; outgrowth in LB +0.2 -0.5 +0.6 N.D. -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.2 -0.5 N.D. +0.4
carbon source 4-Hydroxybenzoic Acid (C) -0.1 -0.0 +1.0 N.D. -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.4 -0.8 N.D. +0.5
nitrogen source nitrogen source nitrate 5mM +0.4 -0.3 +0.6 N.D. -0.0
carbon source Protocatechuic Acid (C) +0.3 -0.4 +0.6 N.D. +0.1
nitrogen source nitrogen source nitrate 20mM +0.3 +0.4 +0.7 N.D. +0.0
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ABZR87_RS00755
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